Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g1057 ATGTCTACTACACCTTCAAAGAGCTTAAGCTGTTACTATGAAGATGACAGTGATCTTAGAAGAGGACCTTGGAGTCTTGAAGAGGATGATTTGCTCACCAATTACATTGCCAATCATGGTGAAGGGAGATGGAATTTGTTGGCTATACGTTCAGGGTTAAAGAGAACAGGAAAGAGTTGTAGATTAAGATGGCTAAATTATCTAAAGCCAGATGTAAAGAGAGGAAATTTAACATCAGAAGAGCAGCTTCTGATTTTTGAACTCCACTCAAAGTGGGGCAACAGGTGGTCAAAAATTGCACAACAACTTCCAGGCAGAACAGACAATGAAATCAAGAATTACTGGAGAACTAGGATTCAGAAACAAGCAAGATATTCGAAATTTGACACAGATAGATTACACACGTCAAGGTGTCTTCATAAAGCACAAGAATCATTTCCTTCAACCATGTCAATCCAAAACCAAGCAATTCCTTTGTCTTTTGATGCTGTTTCTCATTATTCAGAATTTAGGACAATAGCAACAACACAAATCACCTGTGAGGGAGCTTTTTTGAATGAAGGAGGTTCCAATTGTTTGGATCAGCATGAGCAGAATTCAGACTCTGAGCACAACAATGGTTCATGCATTTCCTCTTCAGAATCAGTGAATATCCCAAATATGTCTCAAAATTTGGGATACAACAGTAGTCAATTTCTGGCCTTGGATAATAACAGTGACTTTGGCATCGATGCATATGATGGTTATAAGGCAAATAATTGTGCTTATGATATGGATGCCTTCAACCTGACAACAACAATGGATGCTAAGGATCTGGAATACCCAGTGGTTGATTGCCAATTATCCGAAAGCAATTGGCTAAACAAGGAATTTGCATGTAGCACGTCTAACATAGATGAATTATGGCAATTTAGGAACATACAAAGATCATGA 933 0.3816 MSTTPSKSLSCYYEDDSDLRRGPWSLEEDDLLTNYIANHGEGRWNLLAIRSGLKRTGKSCRLRWLNYLKPDVKRGNLTSEEQLLIFELHSKWGNRWSKIAQQLPGRTDNEIKNYWRTRIQKQARYSKFDTDRLHTSRCLHKAQESFPSTMSIQNQAIPLSFDAVSHYSEFRTIATTQITCEGAFLNEGGSNCLDQHEQNSDSEHNNGSCISSSESVNIPNMSQNLGYNSSQFLALDNNSDFGIDAYDGYKANNCAYDMDAFNLTTTMDAKDLEYPVVDCQLSESNWLNKEFACSTSNIDELWQFRNIQRS* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g1057 310 MobiDBLite consensus disorder prediction 194 213 - -
Apr6g1057 310 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 16 68 IPR017930 -
Apr6g1057 310 ProSiteProfiles Myb-like domain profile. 69 119 IPR001005 -
Apr6g1057 310 CDD SANT 78 117 IPR001005 -
Apr6g1057 310 PANTHER TRANSCRIPTION FACTOR MYB21-LIKE 12 304 - -
Apr6g1057 310 SUPERFAMILY Homeodomain-like 18 115 IPR009057 -
Apr6g1057 310 ProSiteProfiles Myb-like domain profile. 16 68 IPR001005 -
Apr6g1057 310 Pfam Myb-like DNA-binding domain 74 117 IPR001005 -
Apr6g1057 310 Pfam Myb-like DNA-binding domain 21 68 IPR001005 -
Apr6g1057 310 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 12 304 IPR044676 GO:0003700|GO:0006355|GO:0043565
Apr6g1057 310 CDD SANT 23 68 IPR001005 -
Apr6g1057 310 SMART sant 20 70 IPR001005 -
Apr6g1057 310 SMART sant 73 121 IPR001005 -
Apr6g1057 310 Gene3D - 77 145 - -
Apr6g1057 310 Gene3D - 21 73 - -
Apr6g1057 310 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 69 123 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g1057 Apr-Chr6 15252967 15254265 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g1057 16 124 MYB Transcription Factor Family AT1G68320 82.569 6.20e-63 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr6g1057 Myb_DNA-binding 3.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g1057 K09422 - gmx:100804227 427.557
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g1057 6 15252967 15254265 Apr2g1459 2 20650154 20651925 ECH
Apr6g1057 6 15252967 15254265 Apr6g1057 6 15252967 15254265 ECH