Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g1055 ATGAGGTTCCTCCTCGGGTTGTGCCCCTGCTTGCGGAAGACCGGCACAGCCTCCGACGCCGCCGCCGACCACGATCCCAACGCCGCCGCCGACCACGATCCCAACGCCGCCGCCGACACTCTGGATCTCATCTTCGACCTCCACACTCTCCAACTCGCCACCAACTTCTTTTCCAACCTCAACCAACTAGGTCACGGAGGTTTTGGTCCTGTCTTCAAGGGATTGATGCCAAATGGTCAAGAAGTGGCGGTTAAGAAGCTTTCGATGGAATCTAGACAAGGAGTTAGGGAATTCACGAATGAAGTGAAGCTATTACTCAAAATTCAGCACAAAAACTTGGTTACATTGCTTGGTTGTTGTGCAGAAGGACCTGAAAAGATGCTTGTCTATGAGTTTCTCCCAAACAAAAGCCTTGATCACTTTCTGTTTGATAAAAGGAGGTCTTCATCTTTGAACTGGGCAACACGATTTAGAATAGTTACTGGTGTGGCTAGAGGACTTCTCTACCTGCATGAAGAGGCCCCGGAAAGAATTATTCACAGGGACATTAAAGCTAGTAACATATTGCTTGATGAGAAATTAAATCCAAAAATTTCGGACTTTGGCTTGGCAAGGCTGTTTCCTGGGGAGGATACTCATGTGCAGACATTTAGGATTTCCGGTACACATGGCTACATGGCCCCTGAATATGCATTGCGTGGATATCTTTCTGTAAAGACGGATGTTTTCAGTTATGGAGTTCTGGTGTTGGAAATAGTTAGTGGAAGAAAAAATCATGATGTGAAGCTTGGTTCAGAAAAAGCAGATCTCTTGAACTATGCATGGACACTATATCAAGGAGGTAAGGTAATGGACTTAATTGACCCAACGCTTGGTAAATACAATGGTGATGAGGCAGCAATGTGCATTCAGCTAGGTTTGTTGTGCTGTCAAGCAAGTATAATTGAAAGACCTGACATGAACACTGTTCATCTCATGCTCTCAAGTGATTCCTTTACTTTGCCAAGACCAAGTAAACCAGGAATTCAAGGTCGTGCAGGACGTTGGACTACTACCACAACTTCTGCTTTAACCAATACTAATGCTAGTAGTGCTACCAAGGCCTCAGGTGGTGGTAGTTCTGCAGAGGATTATTCTAGAAATTCTATCTCTACTTCATCCTTTGATGAAGGAAGATGA 1179 0.4495 MRFLLGLCPCLRKTGTASDAAADHDPNAAADHDPNAAADTLDLIFDLHTLQLATNFFSNLNQLGHGGFGPVFKGLMPNGQEVAVKKLSMESRQGVREFTNEVKLLLKIQHKNLVTLLGCCAEGPEKMLVYEFLPNKSLDHFLFDKRRSSSLNWATRFRIVTGVARGLLYLHEEAPERIIHRDIKASNILLDEKLNPKISDFGLARLFPGEDTHVQTFRISGTHGYMAPEYALRGYLSVKTDVFSYGVLVLEIVSGRKNHDVKLGSEKADLLNYAWTLYQGGKVMDLIDPTLGKYNGDEAAMCIQLGLLCCQASIIERPDMNTVHLMLSSDSFTLPRPSKPGIQGRAGRWTTTTTSALTNTNASSATKASGGGSSAEDYSRNSISTSSFDEGR* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g1055 392 CDD STKc_IRAK 63 327 - -
Apr6g1055 392 MobiDBLite consensus disorder prediction 345 392 - -
Apr6g1055 392 ProSiteProfiles Protein kinase domain profile. 57 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr6g1055 392 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 7 390 - -
Apr6g1055 392 Pfam Protein tyrosine and serine/threonine kinase 60 258 IPR001245 GO:0004672|GO:0006468
Apr6g1055 392 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 7 390 - -
Apr6g1055 392 SMART serkin_6 57 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr6g1055 392 SUPERFAMILY Protein kinase-like (PK-like) 42 327 IPR011009 -
Apr6g1055 392 Gene3D Transferase(Phosphotransferase) domain 1 133 333 - -
Apr6g1055 392 Gene3D Phosphorylase Kinase; domain 1 22 132 - -
Apr6g1055 392 ProSitePatterns Serine/Threonine protein kinases active-site signature. 178 190 IPR008271 GO:0004672|GO:0006468
Apr6g1055 392 MobiDBLite consensus disorder prediction 336 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g1055 Apr-Chr6 15243953 15246840 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g1055 33 344 Receptor kinase-like Gene Family AT4G11490 50.318 3.82e-112 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Apr6g1055 PK_Tyr_Ser-Thr 1.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g1055 - - aprc:113868075 732.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g1055 6 15243953 15246840 Apr6g1055 6 15243953 15246840 ECH