Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g1051 ATGGCGACGCCGTTAACGGGGCTGCAACACTTGGACGGAGGCGGAGGAGTGGCGGTGCTGTCGAATCCGGTGAACAAGGTCGATTCCTCCTCCAATGGCGGTGGCGGCTTTAATCGCTCCTTATCGGAATCGCCAATTCTGATATTCTCCTTCTTCCACAAAGCGATTCGCAACGAGCTCGACGCGCTGCACAGATTGGCGATGGCCTTCGCCACCGGAGACTGCTCCGACCTCCAGCCTCTGTTCGAACGCTACCATTTCCTCAGATCGATGTATAGACACCACTCCAATGCCGAAGATGAGGTGATCTTTCCAGCTCTAGACATACGCGTGAAGAATGTAGCACAGACATATTCTCTTGAACACAAGGGTGAAAGTGATCTTTTTGATCATCTATTTGATCTCTTAAAGTCTGCCATTCATAGTGACGAAAGTTTCCCAAAAGAGTTAGCATCATGCACGGGAGCTCTGCAGACTTCAGTCAGTCAACACATGGCTAAGGAAGAGGAGCAGGTGTTTCCACTGCTTCTTGAGAAGTTCTCTCTTGAGGAGCAGGCATCTTTAGTGTGGCAGTTTCTTTGCAGTATTCCTGTGAATATGATGACAAAATTTCTTCCATGGCTTTCAACATCTATATCGCCTGATGAATCTCAGGATTTACGGAAGTGCTTAAGCAAGATAGTCCCAGAGGAAAAGCTTCTTCAAAAGGTTGTTTTCACCTGGATGGAAGGGAGAAGTAGTGCTAACACAGTTGAAAATTGTGTAGATCATTCTCAGGTTCGATGTTGTCCTAATCCTTTAACCCATCATATTGGGAAAATAAAATGTGCATGTGAGTCCACCACAACTGGGAAAAGGAAATATTCTGGATCTATCCAAGATGTTTCTGACACCATGGGAACGCATCCTATAGATGAAATACTACTTTGGCATAATGCCATAAAAAAAGAGTTAAATGAGATAGCAGCACAAACCAGAAAGATACAACTCTCTGGAGATTTTACTAATCTGTCAGCTTTCAATGAAAGGTTGCAGTTCATTGCTGAAGTTTGTATATTTCACAGTATTGCTGAGGACAATGTTATTTTTCCAGCAGTAGATGGAAAGTTTTCTTTCTTTCAAGAGCACGCTGAAGAAGAAAGCCAATTTAATGACTTCCGGACTTTGATTGAAAATATTCAAAGTGAAGGAGAAACATCTAGTTCAGAAGCTGAATTTTATTCCAAGTTGTGTTCACATGCTGATCATATACTGGAAACGATACAAAGGCATTTCCATAATGAAGAAGTTCAGGTTCTTCCACTTGCACGTAAGCACTTTAGCTTCAAAAGGCAACGTGAACTTCTGTATCAAAGCTTATGCATGATGCCTTTGAAATTGATTGAGCATGTCCTGCCATGGTTGGTTGGATCATTAATGGAAGATGAAGCACAAATGTTTTTGAAAAACATGCAATTGGCAGCTCCTGCAACAGATTCTGCTTTGGTCACTCTTTTCTGTGGTTGGGCTTGCAAGGCTCGCAAAGATGGTCTGTGTTTGTCTTCAAGTGCATCAGGTTGTTGTCCTGCTCAAAGACTTAATGATATTGAAGAAAATATTGTTCAGTCTTCCTGTACTTCTGCTTCTGTGTTGTCTGGTAGAGATTGCTCAGTGTTAGCTGAATCAGATGGGACTCAACAAAGATCAGTCAAACGAAACACATTAGAAATGCACAAGAATGGAGATGTCCCTAAAACTTCAGAAGAAGAAAGTATCCAGAAACAATGTTGTAGTGCACGATCTTGTTGTGTGCCAGCTTTAGGAGTCAGCAGGAACAATCTGGGGCTGGGTTCACTCTCTACATCCAAGTCCTTACGCTCCTTGTCTTTCACATCTTCTGCTCCATCCCTTAATTCTAGTCTTTTCATATGGGAAACAGATAGTGGCTCATGTGAAGTTGGCTCTACAGAAAGACCAATTGACACCATATTTAAATTCCATAAAGCCATACGCAAAGACTTAGAGTATTTAGATGTTGAATCTGGAAAGCTTTGTGATGGTGATGAAACAATTATTCGGCAATTTAGTGGAAGATTTCGTCTTTTGTGGGGTTTGTATAGAGCTCATAGTAATGCTGAAGACGATATAGTATTTCCTGCACTGGAATCGAAAGAGGCACTTCATAATGTGAGCCATTCATACATGCTTGACCATAAGCAGGAAGAAAAATTATTTGAAGATATTTCTTGCGTTCTTTCAGAGCTTTCTGTCCTACATGAAAACTTGCATGGGACCCATATGTCAGCAGATTTAAGTGAAAGTAATTTTGGAATTTCTGATTCCAATGATAGTGATAATATTAAAAAGTACAATGAGCTTGCAACTAAGCTTCAAGGGATGTGCAAATCTATAAGAGTTACCCTGGATCAGCATATTTTCAGGGAAGAGCTCGAGCTCTGGCCATTGTTTGGGAAACATTTCACTGTGGAAGAACAGGACAAGATAGTGGGCCGGATTATCGGAACTACAGGTGCTGAAGTTCTCCAATCAATGTTACCATGGGTGACTTCTGCACTTACACAGGATGAACAAAACAAAATGATGGACACATGGAAACAGGCAACTAAAAACACTATGTTCAATGAATGGCTAAATGAATGCTTGAAAGAGAGTCCTGTATCTATATCACAGACAGAAGTGTCAGAGCGTAGCACTTCTCAGAGAGGCGCTGATTATCAAGAAAGCTTGAACCTGAACGATCAGATGTTCAAGCCAGGTTGGAAAGACATATTCCGGATGAATCAAAATGAACTTGAGTCAGAAATCCGGAAGGTTTATCGTGACTCAACTCTTGATCCAAGGAGAAAGGCGTACCTTGTGCAGAATCTAATGACAAGTCGCTGGATAGCTGCTCAGCAGAAGTTACCCAAGGCTCCATCTGGGGAATCATCTAGAAAACAAATTGAAGGATGTGCACTGTCATATCGGGACCCAGAGAAACAAGTATTTGGTTGTGAGCACTATAAGCGAAATTGCAAGCTACGAGCTGCTTGCTGTGGCAAGTTATTTACTTGCAGATTTTGCCATGACAATGCGAGTGATCATTCAATGGATAGAAAAGCAACATTGGAAATGATGTGTATGCAGTGCTTGACTATACAGCCAGTTGGGCCTATATGCATGTCAGCTTCATGTAATGGACTTTCAATGGCAAAGTACTATTGCAACATTTGTAAATTTTTTGATGATGAAAGGAATGTCTACCATTGTCCATTTTGCAATATATGCCGAGTTGGACAAGGGCTTGGGATTGATTATTTTCATTGTATGAAATGCAATTGTTGCCTGGGGATAAAATCAGCGTCTCACAAATGCCTAGAGAAAGGTTTAGAAATGAACTGCCCAATTTGCTGTGACGACTTGTTCACATCAAGTGCAACAGTGAGAGCTTTACCTTGTGGGCATTACATGCATTCATCTTGTTTTCAGGCATACACTTGTAGCCACTACACATGTCCTATCTGCAGCAAGTCATTGGGAGATATGGCAGTTTACTTTGGTATGCTTGATGCTTTATTGGCTACTGAGGAGCTTCCTGAAGAGTACAGGGACCGCCATCAGGATATACTCTGCCATGACTGTGATCGAAAGGGCACTTCACGCTTCCATTGGTTATATCACAAATGTGGATTTTGTGGCTCATACAATACCCGGGTGATCAGGAGTGAGGCATCAAATTCCAGTTGCATTTAG 3732 0.4175 MATPLTGLQHLDGGGGVAVLSNPVNKVDSSSNGGGGFNRSLSESPILIFSFFHKAIRNELDALHRLAMAFATGDCSDLQPLFERYHFLRSMYRHHSNAEDEVIFPALDIRVKNVAQTYSLEHKGESDLFDHLFDLLKSAIHSDESFPKELASCTGALQTSVSQHMAKEEEQVFPLLLEKFSLEEQASLVWQFLCSIPVNMMTKFLPWLSTSISPDESQDLRKCLSKIVPEEKLLQKVVFTWMEGRSSANTVENCVDHSQVRCCPNPLTHHIGKIKCACESTTTGKRKYSGSIQDVSDTMGTHPIDEILLWHNAIKKELNEIAAQTRKIQLSGDFTNLSAFNERLQFIAEVCIFHSIAEDNVIFPAVDGKFSFFQEHAEEESQFNDFRTLIENIQSEGETSSSEAEFYSKLCSHADHILETIQRHFHNEEVQVLPLARKHFSFKRQRELLYQSLCMMPLKLIEHVLPWLVGSLMEDEAQMFLKNMQLAAPATDSALVTLFCGWACKARKDGLCLSSSASGCCPAQRLNDIEENIVQSSCTSASVLSGRDCSVLAESDGTQQRSVKRNTLEMHKNGDVPKTSEEESIQKQCCSARSCCVPALGVSRNNLGLGSLSTSKSLRSLSFTSSAPSLNSSLFIWETDSGSCEVGSTERPIDTIFKFHKAIRKDLEYLDVESGKLCDGDETIIRQFSGRFRLLWGLYRAHSNAEDDIVFPALESKEALHNVSHSYMLDHKQEEKLFEDISCVLSELSVLHENLHGTHMSADLSESNFGISDSNDSDNIKKYNELATKLQGMCKSIRVTLDQHIFREELELWPLFGKHFTVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQDEQNKMMDTWKQATKNTMFNEWLNECLKESPVSISQTEVSERSTSQRGADYQESLNLNDQMFKPGWKDIFRMNQNELESEIRKVYRDSTLDPRRKAYLVQNLMTSRWIAAQQKLPKAPSGESSRKQIEGCALSYRDPEKQVFGCEHYKRNCKLRAACCGKLFTCRFCHDNASDHSMDRKATLEMMCMQCLTIQPVGPICMSASCNGLSMAKYYCNICKFFDDERNVYHCPFCNICRVGQGLGIDYFHCMKCNCCLGIKSASHKCLEKGLEMNCPICCDDLFTSSATVRALPCGHYMHSSCFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLATEELPEEYRDRHQDILCHDCDRKGTSRFHWLYHKCGFCGSYNTRVIRSEASNSSCI* 1244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g1051 1243 CDD Hr-like 305 434 - -
Apr6g1051 1243 Pfam Zinc-ribbon 1174 1231 IPR039512 -
Apr6g1051 1243 CDD Hr-like 654 814 - -
Apr6g1051 1243 SUPERFAMILY RING/U-box 1124 1180 - -
Apr6g1051 1243 ProSiteProfiles Zinc finger RING-type profile. 1127 1169 IPR001841 -
Apr6g1051 1243 SUPERFAMILY Zinc hairpin stack 1064 1120 IPR037275 -
Apr6g1051 1243 PANTHER CHY ZINC FINGER PROTEIN 21 1243 - -
Apr6g1051 1243 ProSiteProfiles Zinc finger CHY-type profile. 991 1060 IPR008913 GO:0008270
Apr6g1051 1243 SMART ring_2 1127 1168 IPR001841 -
Apr6g1051 1243 CDD RING-H2_Pirh2 1126 1169 - -
Apr6g1051 1243 Pfam Hemerythrin HHE cation binding domain 652 815 IPR012312 -
Apr6g1051 1243 Pfam Hemerythrin HHE cation binding domain 302 436 IPR012312 -
Apr6g1051 1243 Pfam Hemerythrin HHE cation binding domain 53 176 IPR012312 -
Apr6g1051 1243 SUPERFAMILY CHY zinc finger-like 989 1055 IPR037274 GO:0008270
Apr6g1051 1243 Gene3D nmb1532 protein domain like 648 891 - -
Apr6g1051 1243 Gene3D nmb1532 protein domain like 305 452 - -
Apr6g1051 1243 Gene3D nmb1532 protein domain like 44 194 - -
Apr6g1051 1243 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 21 1243 - -
Apr6g1051 1243 Pfam CHY zinc finger 998 1073 IPR008913 GO:0008270
Apr6g1051 1243 Gene3D - 1198 1239 - -
Apr6g1051 1243 ProSiteProfiles Zinc finger CTCHY-type profile. 1063 1126 IPR017921 -
Apr6g1051 1243 CDD Hr-like 48 174 - -
Apr6g1051 1243 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1122 1171 IPR013083 -
Apr6g1051 1243 Pfam Ring finger domain 1126 1168 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g1051 Apr-Chr6 15202951 15213630 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g1051 1 1242 C2H2 Transcription Factor Family AT3G18290 66.614 0.0 1693
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g1051 K16276 - gmx:100791354 2321.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g1051 6 15202951 15213630 Apr2g1465 2 20689535 20700245 ECH
Apr6g1051 6 15202951 15213630 Apr6g1051 6 15202951 15213630 ECH
Apr2g1465 2 20689535 20700245 Apr6g1051 6 15202951 15213630 PCT