Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g1046 ATGGATCATCACATCCGTAACACACCCTTACTCCTCACAACCATAGCCACCATCTTTTTCTTCATCTTAACAAATTTGGCACAATACCACTGTGATGAAGAAGACACCAAATACAGTAATTGTAGCAGGCCTTACATGTGCGGAGGTGTGACCGCCTCATACCCTTTCTGGGATGGTCACATGAGACCCCAATATTGTGGGCGAGGTGGCCCATTCAAGCTCTCATGTGACGAGAATAAGGATAGTTCGATTCAGATGGGCAACCAAAGTTTCTTTGTGCACAACATTAATATACTCAACTACACCATCAAAATGGGGAGGGAAGACATTCCTTATGGTGAAATCGAAGAGCGTATTTGTTCTAAGGATTTTGCCAACACTAGTTTGGACCCAACTCTCTTCAAGTATACCGAAAATGTACAGAACATCACCATATTCTTGAATTGTTCCTCTGGAGTTCCCAATGATGGTGTTGGACACTCTTTTCTGTGTCCATATGATAGTTATCAGAATCGAGATGCTTTCTTTGTGGATGAGGATGATTCAGACAAAGATATAGAGCAACTACTTAATGCCTGCAACCGTATAATCCAAGTGCAGGCTTTACGCAACATTCCTCATCCTGTTGATCCTAAAAGTGGAATTAATGCTCTTAGAGATGCTTTCATTGGTGGGTTTGAGGTGAAATATAATGCTGGCTTTCAAGAATGCATAGAGTGCATGGAGAGTAAAGGAGCTTGCGGAGGGAAAGGAAGCAATGAATTTACCTGTTATTGCCGGGATGGATCTGATGCTTTGAATTGCAATGGTCACAGTGATGAATATAAAAGTAATCATTGGAACTTGCAAAAGAAAGTCATTATAGGTGTTGGAGGAACAATTGCTGGATGTCTGATATGCATTGCAATGTTTTGTTCTAGAAGCAAGTTATCGACATGGTCTGGAAAATTTTGGTTGTTGACCAAAAGTAACCAAGATACTGAAGCAATTTTCTTAAAAATTCACGGAACCTTAACTCTGAAAAGATACAAGTTTTCAGATATCAAGAAAATGACCGAATCCTTCAAAATTAAACTAGGACAAGGTGGTTTTGGTGCTGTGTACAAAGGAATGCTACCCAGTGGTAGTCTTGTGGCAGTGAAGTTATTGAATGCATCCAAAGGAAACAATGAAGATTTTATGAATGAGGTTGCTAGCATCAGTAGAACCTCTCATGTGAATGTTGTCACCCTTATTGGATATTGTTTGGAAGGCCGCAAGAAAGCCCTTGTATATGAGTTTATGTGCAATGGTTCCCTAGAAAAGTTCATATACAAAAAGGGACCTAAAACCACTTCATCATTGAACTTGGAGACTTTGTATAAAATTGCAATAGGGATAGCTAGAGGGTTAGAGTACTTGCATAGGGGATGCAACACTAGAATTTTACATTTTGACATAAAACCACACAACATTCTTTTGGATGAGAATTTTTGCCCCAAGATATCTGATTTTGGACTAGCAAAGCTTTGTCCTAGGAAAGAGAGCATTATTTCCATGTCAGATGCTAGAGGGACTATAGGATATGTAGCTCCAGAAGTATGGAATAGACATTTTGGAGGGGTTTCACATAAATCTGATGTCTATAGCTATGGAATGATGCTTCTAGAAATGGTGGGAGGGAGGAAGAACATTAATGCTGAAGCAAGTCACACAAGTGAGATATACTTCCCACATTGGGTATACAGCAGGCTTGAACTGGGCAACAATTTGAGACCTGATCATGAGGTGAATATGACTACATATGAAAATGAGATTACAAAGATAATGACCATAGTGGGCTTGTGGTGCGTTCAAACATTGCCCAAAGATAGACCTCCAATGAGTAGAGTCATAGATATGTTGAGAGGAAGCATGAATTCCTTAGAAATGCCACCAAAACCTTTGCTTTCTTCTCCTACTCGTTCAATACCAGAATCATCTACTTCTTGA 1971 0.3968 MDHHIRNTPLLLTTIATIFFFILTNLAQYHCDEEDTKYSNCSRPYMCGGVTASYPFWDGHMRPQYCGRGGPFKLSCDENKDSSIQMGNQSFFVHNINILNYTIKMGREDIPYGEIEERICSKDFANTSLDPTLFKYTENVQNITIFLNCSSGVPNDGVGHSFLCPYDSYQNRDAFFVDEDDSDKDIEQLLNACNRIIQVQALRNIPHPVDPKSGINALRDAFIGGFEVKYNAGFQECIECMESKGACGGKGSNEFTCYCRDGSDALNCNGHSDEYKSNHWNLQKKVIIGVGGTIAGCLICIAMFCSRSKLSTWSGKFWLLTKSNQDTEAIFLKIHGTLTLKRYKFSDIKKMTESFKIKLGQGGFGAVYKGMLPSGSLVAVKLLNASKGNNEDFMNEVASISRTSHVNVVTLIGYCLEGRKKALVYEFMCNGSLEKFIYKKGPKTTSSLNLETLYKIAIGIARGLEYLHRGCNTRILHFDIKPHNILLDENFCPKISDFGLAKLCPRKESIISMSDARGTIGYVAPEVWNRHFGGVSHKSDVYSYGMMLLEMVGGRKNINAEASHTSEIYFPHWVYSRLELGNNLRPDHEVNMTTYENEITKIMTIVGLWCVQTLPKDRPPMSRVIDMLRGSMNSLEMPPKPLLSSPTRSIPESSTS* 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g1046 656 MobiDBLite consensus disorder prediction 635 656 - -
Apr6g1046 656 Gene3D Phosphorylase Kinase; domain 1 319 427 - -
Apr6g1046 656 ProSiteProfiles Protein kinase domain profile. 353 643 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr6g1046 656 Gene3D Transferase(Phosphotransferase) domain 1 428 642 - -
Apr6g1046 656 Pfam Protein tyrosine and serine/threonine kinase 356 628 IPR001245 GO:0004672|GO:0006468
Apr6g1046 656 SMART serkin_6 353 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr6g1046 656 ProSitePatterns Protein kinases ATP-binding region signature. 359 381 IPR017441 GO:0005524
Apr6g1046 656 PANTHER GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE, PROTEIN KINASE RLK-PELLE-LRK10L-2 FAMILY-RELATED 10 656 - -
Apr6g1046 656 Pfam Wall-associated receptor kinase C-terminal 171 262 IPR032872 -
Apr6g1046 656 PANTHER RUST RESISTANCE KINASE LR10-RELATED 10 656 IPR045874 GO:0004672
Apr6g1046 656 Pfam Wall-associated receptor kinase galacturonan-binding 41 105 IPR025287 GO:0030247
Apr6g1046 656 SUPERFAMILY Protein kinase-like (PK-like) 338 628 IPR011009 -
Apr6g1046 656 ProSitePatterns Serine/Threonine protein kinases active-site signature. 475 487 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g1046 Apr-Chr6 15154372 15158102 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g1046 35 655 Receptor kinase-like Gene Family AT5G38260 37.697 2.80e-137 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Apr6g1046 PK_Tyr_Ser-Thr 2.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g1046 - - gmx:100792936 655.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1469 2 20722641 20730763 Apr6g1046 6 15154372 15158102 PCT
Apr6g1046 6 15154372 15158102 Apr2g1470 2 20730589 20736938 PCT