Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g1042 ATGGATCATCACATCCGTAACACACCCTTACTCCTCACAACCATAGCCACCATCTTTTTCTTCATCTTAACAAATTTGGCACAATACCACTGTGATGAAGAAGACACCAAATACAGTAATTGTAGCAGGCCTTACATGTGCGGAGGTGTGACCGCCTCATACCCTTTCTGGGATGGTCACATGAGACCCCAATATTGTGGGCGAGGTGGCCCATTCAAGCTCTCATGTGACGAGAATAAGGATAGTTCGATTCAGATGGGCAACCAAAGTTTCTTTGTGCACAACATTAATATACTCAACTACACCATCAAAACGGGGAGGGAAGACATTCCTTATGGTGAAATCGAAGAGCGTGTTTGTTCTAAGGATTTTGCCAACCTTAGTTTGGACCCAACTCTCTTCAAGTATACCGAAAATGTACACAACATCACCATATTCTTGAATTGTTCCTCTGGAGTTTCCAATAATGGTGTTGGACACTCTTTTCTGTGTCCATATCATAGTTATCAGAATCAAGATGCTTTCTTTGTGGATGAGGATGATTCAGACAAAGATATAGAGCAACTATTTAATGCCTGCAACCGTAGAATCCAAGTGCAGGCTTTACGCAACATTCCTCATTATGGTGGTCCTGAAAGTGGAATTAATGCTCTTAGAGATGCTTTCATTGGTGGGTTTGAGGTGAAATATAATGCTAGCTCTCAAGAATGCATAGAGTGCACGGAGAGTAAAGGAGCTTGCGGAGGGAAAGGAAGCAATGAATTTACCTGCTATTGCCGGGATGGATTTGATGCTTTGAATTGCAATGGTCACAGTGATGAATATAAAAGCAGATTGAATCGGAAAAAGGGAATCATTATAGGTGTTTCTTCTCTGTTTGGAGTATCACTTGTAGCAATCATTGGCTATTTCTTATGGCAGCGCCGAAAGAAGAATAGTTATGCAATGCCATATATACAATCTCGGAGCCTGTCTTCTGATCCATCACTGAAAGACACTGAGAAGGGAAGTCTAAACTTTGCGCCTGGAGTGCACCTCTTCTCCTATGATGAACTTGAAGAGGCCACAAATTACTTTGACTCGTCTAGAGAACTAGGAGAAGGGGGATTTGGGACAGTGTACTTTGGAAAACTACGTGATGGCCGTTGTGTTGCAGTGAAGAGGTTGTATGAGAACAATTGCAGGAGAGTTGAGCAATTCATGAATGAAATTAAGATCCTAGCTCGGTTAGTCCATCCAAATCTTGTGTCACTATATGGATGCACCTCTCGCCACAGCCGTGAACTTCTGCTTGTATATGAGTACATTTCTAATGGAACTGTTGCTGATCATCTTCATGGTGGAAGAGCCAAACCAGGAAACTTCCCTTGGCATATTAGAATGAACATTGCTGTGGAGACTGCAAGTGCATTGAAATATCTTCATGTTTCCGATATTATCCACAGAGATGTGAAAACCAACAATATACTTCTTGATGATCAATTTCGTGTCAAAGTAGCAGATTTTGGACTCTCACGCCTTTTTCCAAACCTTGTCACTCACATTTCAACAGCTCCACAAGGAACTCCAGGTTATGTGGATCCAGAATACCATGAATGCTACCAGCTTACCATCAAAAGTGATGTTTATAGCTTTGGAGTGGTGCTAATTGAGCTGATATCATCGTTGCCTGCGGTTGATATCACGAGACATAGGCATGAAATTAATTTGGCCAACATGGCCATTAACAAGATTCATACTCAGGCACTGCATGAGCTTGTAGACCCTACACTTGGCTTTGAATCAGATTATAAGGTAAAGAAAATGATAAATGCTGTGGCTGAGTTAGCATTTCAGTGCTTGCAGAGTTCCAAAGATATGAGACCTTCTATGGATGAAGTGTATGATACTCTCAAGGATATACAAAGTGGAAGCAATCATAAAAGCCAACCTGAGGTAATGGATATCTCAAGTTCAGCTGATGATGTTGTGTTGCTGAAGGATGATCCACCCCCACCGTCACCTGATTCTAATGCTGTGAGCAAATCTACAACACCAAATGCTAGTGGATAA 2052 0.4167 MDHHIRNTPLLLTTIATIFFFILTNLAQYHCDEEDTKYSNCSRPYMCGGVTASYPFWDGHMRPQYCGRGGPFKLSCDENKDSSIQMGNQSFFVHNINILNYTIKTGREDIPYGEIEERVCSKDFANLSLDPTLFKYTENVHNITIFLNCSSGVSNNGVGHSFLCPYHSYQNQDAFFVDEDDSDKDIEQLFNACNRRIQVQALRNIPHYGGPESGINALRDAFIGGFEVKYNASSQECIECTESKGACGGKGSNEFTCYCRDGFDALNCNGHSDEYKSRLNRKKGIIIGVSSLFGVSLVAIIGYFLWQRRKKNSYAMPYIQSRSLSSDPSLKDTEKGSLNFAPGVHLFSYDELEEATNYFDSSRELGEGGFGTVYFGKLRDGRCVAVKRLYENNCRRVEQFMNEIKILARLVHPNLVSLYGCTSRHSRELLLVYEYISNGTVADHLHGGRAKPGNFPWHIRMNIAVETASALKYLHVSDIIHRDVKTNNILLDDQFRVKVADFGLSRLFPNLVTHISTAPQGTPGYVDPEYHECYQLTIKSDVYSFGVVLIELISSLPAVDITRHRHEINLANMAINKIHTQALHELVDPTLGFESDYKVKKMINAVAELAFQCLQSSKDMRPSMDEVYDTLKDIQSGSNHKSQPEVMDISSSADDVVLLKDDPPPPSPDSNAVSKSTTPNASG* 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g1042 683 ProSitePatterns Protein kinases ATP-binding region signature. 365 387 IPR017441 GO:0005524
Apr6g1042 683 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.2 14 673 - -
Apr6g1042 683 ProSitePatterns EGF-like domain signature 2. 257 268 IPR000742 -
Apr6g1042 683 ProSiteProfiles Protein kinase domain profile. 359 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr6g1042 683 MobiDBLite consensus disorder prediction 635 649 - -
Apr6g1042 683 MobiDBLite consensus disorder prediction 635 683 - -
Apr6g1042 683 Pfam Wall-associated receptor kinase galacturonan-binding 41 104 IPR025287 GO:0030247
Apr6g1042 683 SUPERFAMILY Protein kinase-like (PK-like) 339 631 IPR011009 -
Apr6g1042 683 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 14 673 IPR044652 -
Apr6g1042 683 SMART serkin_6 359 636 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr6g1042 683 Gene3D Transferase(Phosphotransferase) domain 1 436 657 - -
Apr6g1042 683 Pfam Wall-associated receptor kinase C-terminal 170 262 IPR032872 -
Apr6g1042 683 Gene3D Phosphorylase Kinase; domain 1 331 435 - -
Apr6g1042 683 ProSitePatterns Serine/Threonine protein kinases active-site signature. 479 491 IPR008271 GO:0004672|GO:0006468
Apr6g1042 683 Pfam Protein kinase domain 360 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g1042 Apr-Chr6 15124999 15131815 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g1042 237 683 Receptor kinase-like Gene Family AT1G25390 53.493 2.21e-143 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Apr6g1042 Pkinase 9.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g1042 - - gmx:100800873 694.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g1042 6 15124999 15131815 Apr2g1760 2 23248432 23253255 ECH
Apr6g1042 6 15124999 15131815 Apr6g1042 6 15124999 15131815 ECH