Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g1040 ATGCCTTGGATTACACGATTGAATATCGCCATTGATACTGCAAATGCATTGGACTATCTTCACTATTATGGCATCATCCACCGCAATTTAAAGTCCAGCAATATTCTCCTAGATGTGAACTTTTGTGCTAAAATTTCTAACCTTCACTTATCTCAGAAACTCCCAGATGGAGTTCCTGTCGATGCCATCCATGTTACAAGTGATAGAATTGGATCTTTTGGTTATGTAGATCCAGAACAAGTGACAAAAGGTTGGCTTAGTGTCAAAAATGATGTTTATAGCTTTGGAGTGTTGTTGTGTGAGCTTCTATCATCAAAGCTGGCAACATATTTTGCTTGGAGTGAAGAGAATAATCTTGCTACTATCTTAAGAAGAGAAATTGAAAGCCAAGCTTTGGTGGAGCTATTGGATACAAGACTTGGCTTCCAAACAGACCCGAAGATCAAGCAGATGATGATTGCTACGGCTGAGCTTGCATATTGGTGCTTACAATGTCCACAAGAATTAAGGCCAAACATGGAACAAGTGCTACAGATTCTCAATGGCATAAAACAAGGGAGATATGAAATAAACTCAATTAAAGCTTTCAAAACATTCCACCATGCTGAACTTGAAGAAGCTACTAACCATTTTGACACTTGCCTTGGAAAGGGAGGGTATGGCATTGTCTACTATGGAAAACTTAAAGATGGGCGAGAGGTTGCAATAAAATGCTTCCATCAGGAGACAGACAAAACTATTAAGCAATTCATGAAAGAAATCGAGATCTTAAGTCTTTTGCACCATCAAAATTTGGTTTTACTTTATGGCTGCAGTTCTCGCCATAGCAACAAACATATGCTAGTGTATGAGTACATCTCCAATGGCACTCTTTCTAAGTATCTTCATGAATCTCCCAGTCCTAAGCTACCATGGCATACTAGATTGAATATTGCCATTGAAACTGCAACTGCTTTGGTATATCTTCATGAATCAGGTATCATCCACCGTGACATAAAAGGAAGCAATATTCTTTTGGATGAAAATTTTACTGCTAAGGTTGCAGATTTTGGACTTTCAAGGTCTCTTCCAGATTATGTTACTCATGTTTCAACTATTCCAGTAGGAACTATTGCTTACATAGATCCTGATTACTATTATTCTGGGAGGGTCAGTGACAAAAGTGATGTCTATAGCTTTGGAGTAGTCTTGTTTCAAATCATATCATCTAGACCCCCAAGTTTAATGGAAGGCACAGATTATGTTACTCTTGCACAATTTTCCATGAGAAAAATCTTAAACAAGGAATTAAATGAGCTAGTGGATCCAAGTCTTTGTTTTGATTCTGATAAAAGCATTATGGATATGGTAACAGCAGTGGCAGAGTTAGCATTTCAGTGTGTGCAGTGTCCCAAGGATCTTAGACCATCCATGAAACAGGTGCTAGAGACCCTGGAAGGCATAAGGAAAGGGTGTTGGGGATTCAACCAGATAACCTAG 1479 0.3861 MPWITRLNIAIDTANALDYLHYYGIIHRNLKSSNILLDVNFCAKISNLHLSQKLPDGVPVDAIHVTSDRIGSFGYVDPEQVTKGWLSVKNDVYSFGVLLCELLSSKLATYFAWSEENNLATILRREIESQALVELLDTRLGFQTDPKIKQMMIATAELAYWCLQCPQELRPNMEQVLQILNGIKQGRYEINSIKAFKTFHHAELEEATNHFDTCLGKGGYGIVYYGKLKDGREVAIKCFHQETDKTIKQFMKEIEILSLLHHQNLVLLYGCSSRHSNKHMLVYEYISNGTLSKYLHESPSPKLPWHTRLNIAIETATALVYLHESGIIHRDIKGSNILLDENFTAKVADFGLSRSLPDYVTHVSTIPVGTIAYIDPDYYYSGRVSDKSDVYSFGVVLFQIISSRPPSLMEGTDYVTLAQFSMRKILNKELNELVDPSLCFDSDKSIMDMVTAVAELAFQCVQCPKDLRPSMKQVLETLEGIRKGCWGFNQIT* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g1040 492 Gene3D Phosphorylase Kinase; domain 1 199 285 - -
Apr6g1040 492 Pfam Protein kinase domain 8 178 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr6g1040 492 ProSitePatterns Protein kinases ATP-binding region signature. 215 237 IPR017441 GO:0005524
Apr6g1040 492 PANTHER TYROSINE KINASE FAMILY PROTEIN 1 492 - -
Apr6g1040 492 ProSiteProfiles Protein kinase domain profile. 1 183 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr6g1040 492 SUPERFAMILY Protein kinase-like (PK-like) 192 482 IPR011009 -
Apr6g1040 492 ProSitePatterns Serine/Threonine protein kinases active-site signature. 327 339 IPR008271 GO:0004672|GO:0006468
Apr6g1040 492 SMART serkin_6 209 476 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr6g1040 492 PRINTS Tyrosine kinase catalytic domain signature 283 296 IPR001245 GO:0004672|GO:0006468
Apr6g1040 492 PRINTS Tyrosine kinase catalytic domain signature 321 339 IPR001245 GO:0004672|GO:0006468
Apr6g1040 492 PRINTS Tyrosine kinase catalytic domain signature 388 410 IPR001245 GO:0004672|GO:0006468
Apr6g1040 492 CDD STKc_IRAK 215 481 - -
Apr6g1040 492 ProSiteProfiles Protein kinase domain profile. 209 481 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr6g1040 492 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 1 492 IPR044652 -
Apr6g1040 492 Pfam Protein tyrosine and serine/threonine kinase 211 478 IPR001245 GO:0004672|GO:0006468
Apr6g1040 492 Gene3D Transferase(Phosphotransferase) domain 1 286 485 - -
Apr6g1040 492 Gene3D Transferase(Phosphotransferase) domain 1 1 198 - -
Apr6g1040 492 SUPERFAMILY Protein kinase-like (PK-like) 1 182 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g1040 Apr-Chr6 15110847 15114812 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g1040 199 482 Receptor kinase-like Gene Family AT1G25390 52.069 1.16e-95 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Apr6g1040 PK_Tyr_Ser-Thr 2.5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g1040 - - aprc:113866770 984.556