Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g1032 ATGCCTGTTGTCACAGAACACATCAAATGGAGGAGACCAAGAAACCAGTTAAGACACCCCATTTCAGAAACTCATCCAATTTCTACAATCCAATCCGTTCAATGCAAATCCGCTATCTCCTCTCTCTTATCTTCTTTCTCCAACACCACCAATGAAACCACACATGAAAGAGGCCATAACAGTAAAAACAACAACAACAACAACATGGACAAGAACAAAAGCAACAAAAGCAACAGAAACTTCTCTGCTGCAACGTTCGGAGGGTTCGGCTGCACTGCTGGTGAGTCACAGAAGGTGTCGGTTCCAGCAGTGATTCGATCCTCCGCAGAGTGGCAAGGGAAGAAGAACAGAAAGAAGAAACACAGAAGGAACAGTAACAGTAACAGAAGCAAGACTTGTGATGGGGTTGTTGTTGATGATGGTTCTTCTGGTTCCCTCGTGGATTTTCAGGATGTTTGGTGTGGCCCTGGAATTGGGTTCTCAACTGATGCTGCTGTTGCATCTGTGGATTGTGTTGTGGGTAGGAGGAATGTGTCTGCAAGAGGAAAACTTGATGTGGAGAGAATAACACACAGGGAGCGTTCATCTTATTTTGGAAGGCGCACTGTGAACTCAGAAAGCTTCTCCTTTGTGGATGATGATGATCATGACATTGTTTCAGCACGCCATGGATTAGACCCTTTTGGCACTGCTAGATTCTATCGCCATGTTCCATATCCTTCCTCTGATGGTCTTGCTGAGATAATGATACTTCAAGGAAGAATAATTATGGGGGGACGATTAAATTCACATGACCAATTTAGAGATTGGAGACTTGATGTTGATAACATGTCATATGAGCAATTGCTTGAGCTGGGTGAGAGAATTGGTTATGTCAACACTGGACTTAAAGAAGATGAGATGGGACTCAACATAAGGAAAGTTAAACTTTCAATTTCAAATGATACATCAAAGCATCAAATAGAAAAAAAGTGCAGTGTTTGTCAAGAGGAGTATGAATCGGATGATGAATTGGGGAGATTAAATTGTGGACATAGCTATCATTTTGAGTGTATAAAACAATGGTTAGTGCATAAAAACTTCTGCCCAGTGTGTAAGCAAGAAGTTGTGGCTCGAATCTGA 1122 0.4198 MPVVTEHIKWRRPRNQLRHPISETHPISTIQSVQCKSAISSLLSSFSNTTNETTHERGHNSKNNNNNNMDKNKSNKSNRNFSAATFGGFGCTAGESQKVSVPAVIRSSAEWQGKKNRKKKHRRNSNSNRSKTCDGVVVDDGSSGSLVDFQDVWCGPGIGFSTDAAVASVDCVVGRRNVSARGKLDVERITHRERSSYFGRRTVNSESFSFVDDDDHDIVSARHGLDPFGTARFYRHVPYPSSDGLAEIMILQGRIIMGGRLNSHDQFRDWRLDVDNMSYEQLLELGERIGYVNTGLKEDEMGLNIRKVKLSISNDTSKHQIEKKCSVCQEEYESDDELGRLNCGHSYHFECIKQWLVHKNFCPVCKQEVVARI* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g1032 373 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 3 371 IPR045191 GO:0061630
Apr6g1032 373 SUPERFAMILY RING/U-box 324 370 - -
Apr6g1032 373 MobiDBLite consensus disorder prediction 49 79 - -
Apr6g1032 373 PANTHER C3HC4-TYPE RING ZINC FINGER PROTEIN 3 371 - -
Apr6g1032 373 ProSiteProfiles Zinc finger RING-type profile. 325 366 IPR001841 -
Apr6g1032 373 SMART ring_2 325 365 IPR001841 -
Apr6g1032 373 MobiDBLite consensus disorder prediction 110 134 - -
Apr6g1032 373 Pfam Ring finger domain 324 366 IPR001841 -
Apr6g1032 373 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 293 371 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g1032 Apr-Chr6 15049561 15053852 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g1032 4 280 C3H Transcription Factor Family AT1G73760 38.644 1.76e-47 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g1032 - - gmx:100818517 524.628
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g1032 6 15049561 15053852 Apr2g1530 2 21207027 21211102 ECH
Apr6g1032 6 15049561 15053852 Apr6g1032 6 15049561 15053852 ECH