Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g1030 ATGGACCCACCACCCCTCTCCACCACCCTGGCCACCTCAACCATCACCCAACAACACCATCCTGATTCAGTAGAGTCCTCATCGCCGCGATCACGCAACGCCGAAACATGGAATGATGAGCCTCTCCCTCCTATTCCTGGTGCCAAACTTCGCCTCATGTGCAGCTATGGTGGCCACATTATGCCACGTCCTCATGATAAGTCCCTCTGCTATGTCGGCGGCGACACGAGGATCGTGGTGGTGGATCGCCATTCCTCACTGAAAGAGCTATGTGAACGCCTCTCCCGAACCATTCTCAATGGTAGACCCTTCACGCTCAAGTACCAGCTTCCCAATGAGGACCTTGACAACCTCATCACTGTCACCACTGATGAAGATCTTGACAACATGATAGAAGAGTATGATCGTGTAGCTGCAAAACCTTCTCCTTCACGCTTAAGGGTGTTCTTGTTCTTCACCAAACCTGAGACTACAGCTTCAATGGGGTCACTCCTTGATGATGCCAAGTCAGAGACATGGTTTGTAGATGCACTCAATAACTCAGGAATTCTCTCAAGGGTGGTGTCAGATTCTGCTGCAGGGGATTGTTTTGTGAACCTTGATGGTGTTGGTGGTGTTAGTGCCAGTGGCTCAAGCAATAACTTGGAGGCTCAAGGTGGTGATGCCAATAACAAGGTTAAGAATTTGCATGATGTTGTGCAATCAATGCCTGGTTCACCTATGATGGAGAATACTTCTTCTTCATCTCCTTCTATGGCTAATTTGCCACCGATTCGGGTTCGTGTTGATGACAACGGTAGTAGGCTTCAGCAAGAGAATAAGGTTGGGGTTGGAGTGGTGGAGGAGCAGTTTGCTCAGATGACAATAGCTGCAAGTGGAGTGAAGCCAGATGATGGGTTTGTAAATGTTGTTTCTTCTGCAGCTGTGACTATGACTTCACTTGGTGTGGTTGCTGCTAGTGATAATGTGAATAGGGTTGTTTCTGATGATGAGAGATCGGATCATGGATTTAGGAAACCACCTTTACCATTGCAGCTTGTGCAACCAAGGACTAGTGCTGGTTTGAGTCTGCCTTCTCCTGATTCAGTTGCAAGTGACAGTAGTATTGCATCTACAAATTCTTTCTCCAAGATTGTTTATTATCAAGATCAAGTCCAAGCTGCTCCTATAGATAACAAAGTTGTTGCTTTGCCAAATGCCAAGAGTGAAATATCTGATCAAGTCCTTGGACTACAAAGGGAACAGGTTCATGATTCTGGTTACACATTACCCCCACAATTGGATCAAAATCAACAAGTTCAACAGCCATTGGTCCATGCCAACACTCATTACATCCACCACCCTACAGCCACAGGTCCTATGCCAGTTTCATCCTACTACCCAGTTTATCCCCCACCACCACAAAAACAACAACTTCCCCATCCAATTGGTCAACAACAGTACCCAGTTTATGTGATGCCTGTTGGACCTACACAACCATACAGCATGGCATTGCAACCCAACATAGCTGATCCAAATGTTGTAGCCTCAGGTAGGCCACTAATACCCCCTCAAAGTGTTGTTGCCTCAACAACATACAAGGAAGGAACTCCACCTATTTATCCCACCAAATCAGTTACTCCTACCATACCTGAAGTGACTCCAAGTGTTTACAAAGCTCCAGTGGCATCAAATCCTGCATTTGTTCCAATAACTCCCAATCAATTTCAGCCACATTATATGGGTTTGCCTCAGTTCCATCATCCACCACAGTCCATTGCTGTGGCTCCTTCTAGTACTACTAATTATGGTTATGAATATGGTGCCCATGTTCAAGACCAAGCATACTACACAACACAACAAACTACTACGCCTTTGCTTCCTCAGTACCAATCCATGACTCCAGCTGTAGCTGCTGCAGCACTTTCAGATGCTTCAAAACAATTTCCTGCAGACAATAACCAGCATCCAAACAGAACTTCACAGCCTGCATAA 1974 0.46 MDPPPLSTTLATSTITQQHHPDSVESSSPRSRNAETWNDEPLPPIPGAKLRLMCSYGGHIMPRPHDKSLCYVGGDTRIVVVDRHSSLKELCERLSRTILNGRPFTLKYQLPNEDLDNLITVTTDEDLDNMIEEYDRVAAKPSPSRLRVFLFFTKPETTASMGSLLDDAKSETWFVDALNNSGILSRVVSDSAAGDCFVNLDGVGGVSASGSSNNLEAQGGDANNKVKNLHDVVQSMPGSPMMENTSSSSPSMANLPPIRVRVDDNGSRLQQENKVGVGVVEEQFAQMTIAASGVKPDDGFVNVVSSAAVTMTSLGVVAASDNVNRVVSDDERSDHGFRKPPLPLQLVQPRTSAGLSLPSPDSVASDSSIASTNSFSKIVYYQDQVQAAPIDNKVVALPNAKSEISDQVLGLQREQVHDSGYTLPPQLDQNQQVQQPLVHANTHYIHHPTATGPMPVSSYYPVYPPPPQKQQLPHPIGQQQYPVYVMPVGPTQPYSMALQPNIADPNVVASGRPLIPPQSVVASTTYKEGTPPIYPTKSVTPTIPEVTPSVYKAPVASNPAFVPITPNQFQPHYMGLPQFHHPPQSIAVAPSSTTNYGYEYGAHVQDQAYYTTQQTTTPLLPQYQSMTPAVAAAALSDASKQFPADNNQHPNRTSQPA* 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g1030 657 PANTHER OCTICOSAPEPTIDE/PHOX/BEM1P FAMILY PROTEIN 1 650 - -
Apr6g1030 657 MobiDBLite consensus disorder prediction 1 35 - -
Apr6g1030 657 Gene3D - 69 152 - -
Apr6g1030 657 SMART PB1_new 64 153 IPR000270 GO:0005515
Apr6g1030 657 PANTHER OS05G0427100 PROTEIN-RELATED 1 650 - -
Apr6g1030 657 ProSiteProfiles PB1 domain profile. 49 151 IPR000270 GO:0005515
Apr6g1030 657 MobiDBLite consensus disorder prediction 1 42 - -
Apr6g1030 657 Pfam PB1 domain 65 151 IPR000270 GO:0005515
Apr6g1030 657 SUPERFAMILY CAD & PB1 domains 65 162 - -
Apr6g1030 657 MobiDBLite consensus disorder prediction 640 657 - -
Apr6g1030 657 CDD PB1_UP2 53 151 - -
Apr6g1030 657 MobiDBLite consensus disorder prediction 637 657 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g1030 Apr-Chr6 15037613 15040176 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g1030 38 180 MAP Kinase Kinase Kinase AT5G57610 44.828 3.93e-28 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g1030 - - var:108343763 953.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g1030 6 15037613 15040176 Apr2g1532 2 21219262 21226392 ECH
Apr6g1030 6 15037613 15040176 Apr6g1030 6 15037613 15040176 ECH