Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g1011 ATGGCAGAACTTGATCCGTGCAAGAAAGTAGCTGATAGGTATCTCAAGCGTGAGGTGCTTGGTGAAGGTACCTATGGTGTCGTATACAAAGCCATTGATACCCAGACAGGGCAGACAGTTGCAATTAAGAAGATCCGGCTTGGCAAGCAGAAAGAAGGGGTCAATTTTACAGCTCTTAGAGAAATTAAACTGCTTAAAGAGCTCAAAGATCCAAACATTATTGAGTTGATTGATGCATTCCCGCATAAAGGGAATTTGCATCTTGTGTTTGAATTTATGGAGACAGACCTTGAAGCTGTTATACGAGACCGAAATATTGTTCTTTCACCTGGCGACATAAAATCTTTCCTTCAAATGACGCTAAAAGGCCTTGCTTATTGCCACAAGAAATGGGTGTTGCACAGGGATATGAAGCCAAATAACTTGCTGATAGGACCTAATGGACAGCTGAAACTTGCAGATTTTGGTTTAGCACGGATATTTGGAAGCCCAGATCGCAGGTTCACTCATCAGGTGTTTGCTCGGTGGTATAGAGCACCTGAACTATTGTTTGGTACCAAGCAGTATGGTCCAGGGGTAGATGTTTGGGCTGCAGCTTGTATATTTGCTGAACTTCTTCTTCGTCGACCCTTTCTGCAGGGTTCAAGTGATATTGATCAATTAGGAAAGATTTTCGCAGCATTTGGAACGCCATCACCTTCTCAGTGGCCTGATATGGTTTACCTTCCTGATTATGTTGAATACCAATTTGTTCCTTCCCCACCTTTGCGTTCTTTATTTCCAATGGCGAGTGATGATGCTTTAGATTTGTTGTCAAAGATGTTTGCATATGATCCAAAAGTTAGAATTTCAGTGCAGCAGGCATTAGAGCACAGGTACTTTTCTTCAGTGCCTCTGCCCACAGATCCTGAGAAGCTTCCAAGACCTGCCCCTAAGCGGGAATCTGGGGTCTCAGATTTAAATTCAAATGATGGTCCTACTGTCTTGTCACCTCCAAGAAAGTCTAGGAGAGTGATGCCGGGGCGTGATGGGTCTGAAAGCAATTCTTTGCATGGAGATAGATTTGATGACAATGTTGGTAATGTCAGACAGGCAGTTGGTGATAATACAGGCAAGAATGAGCCAGCACCAATGTCGCTAGATTTTTCTCTTTTTGGATTAAAACCTCCAAATAGACCTACAATTACCAGTGCTGACAGATCACATTTAAAAAGAAAATTAGATCTAGAATTCTAG 1236 0.4248 MAELDPCKKVADRYLKREVLGEGTYGVVYKAIDTQTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKDPNIIELIDAFPHKGNLHLVFEFMETDLEAVIRDRNIVLSPGDIKSFLQMTLKGLAYCHKKWVLHRDMKPNNLLIGPNGQLKLADFGLARIFGSPDRRFTHQVFARWYRAPELLFGTKQYGPGVDVWAAACIFAELLLRRPFLQGSSDIDQLGKIFAAFGTPSPSQWPDMVYLPDYVEYQFVPSPPLRSLFPMASDDALDLLSKMFAYDPKVRISVQQALEHRYFSSVPLPTDPEKLPRPAPKRESGVSDLNSNDGPTVLSPPRKSRRVMPGRDGSESNSLHGDRFDDNVGNVRQAVGDNTGKNEPAPMSLDFSLFGLKPPNRPTITSADRSHLKRKLDLEF* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g1011 411 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Apr6g1011 411 ProSitePatterns Protein kinases ATP-binding region signature. 20 44 IPR017441 GO:0005524
Apr6g1011 411 CDD STKc_CDK7 13 307 IPR037770 GO:0005675|GO:0008353|GO:0070985
Apr6g1011 411 MobiDBLite consensus disorder prediction 336 358 - -
Apr6g1011 411 Gene3D Transferase(Phosphotransferase) domain 1 95 310 - -
Apr6g1011 411 SUPERFAMILY Protein kinase-like (PK-like) 9 302 IPR011009 -
Apr6g1011 411 MobiDBLite consensus disorder prediction 296 383 - -
Apr6g1011 411 SMART serkin_6 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr6g1011 411 Gene3D Phosphorylase Kinase; domain 1 5 94 - -
Apr6g1011 411 Pfam Protein kinase domain 16 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr6g1011 411 ProSiteProfiles Protein kinase domain profile. 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr6g1011 411 PANTHER CYCLIN-DEPENDENT KINASE D-2 9 357 - -
Apr6g1011 411 PANTHER CELL DIVISION PROTEIN KINASE 9 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g1011 Apr-Chr6 14817065 14821393 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g1011 8 411 Core Cell Cycle Gene Families AT1G73690 75.990 0.0 615
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK7 Apr6g1011 Pkinase 3.7e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g1011 K02202 - gmx:100814263 773.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g1011 6 14817065 14821393 Apr6g1011 6 14817065 14821393 ECH