Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g1009 ATGGATATCGAGGAGGACATCCGTTCTTTGCAGCTTGAATCAGCAGAAGACAATAATGGGGTTGGAAGTCCAGAGGATGGAAAGGCGGAAGAAGTTGAGAAATCTGATAAGATGGATGAAGATTCAAAGCAGGAGGTTCAGGAACAGCCTTTCCAGGCTGAGCCAAAAGATAAGGAAATTCCTCCCATGCAAGATGAAGAAGATGATGTGGAGATAACGAACAAAAGACACTTAAATGTTGTGTTTATTGGTCATGTGGATGCTGGTAAGTCTACAACAGGAGGCCAGATACTTTTCCTCAGTGGTCAGGTTGATGAGCGGACTATCCAAAAATATGAGAAAGAAGCTAAGGACAAAAGTAGAGAAAGCTGGTATATGGCTTATATAATGGACACAAATGAGGAGGAGAGGGTAAAGGGAAAGACAGTTGAAGTAGGGAGAGCCCACTTTGAAACTGAGACAACAAGATTTACAATTTTGGACGCACCTGGTCACAAGAGTTATGTCCCTAACATGATCAGTGGTGCATCTCAAGCTGATGTTGGAGTTTTGGTAATTTCTGCTCGAAAGGGAGAATTTGAAACTGGATATGAGAGAGGTGGACAAACCCGTGAACACGTTCAGCTTGCAAAAACACTCGGTGTGGCTAAGCTGCTTGTTGTTGTCAATAAAATGGATGATCCTACGGTGATGTGGTCAAAAGAAAGGTATGATGAAATTGAGTCAAAGATGATACCATTTCTGAAACAATCGGGTTACAATGTGAAGAAAGATGTCCTGTTTCTACCAATATCTGGCCTGATTGGTACAAACATTAAAGTGAGTGTGGATAAGAGCATTTGTCCTTGGTGGGATGGTCCTTGCCTATTTGAAGCTCTTGATGCTGTTGAAGTTCCTCCACGAGATCCCAAAGCTCCTTTTAGGATGCCTATACTTGACAAATTTAAAGACATGGGAACTGTTGTTATGGGTAAAGTGGAATCTGGCACTGTTCGTGAGGGAGATTCCTTGTTGGTTATGCCAAATAAGGATCAAGTAAAAGTTGTTGGAGTATTTATTGACGAGAATCGGGTTAAACGTGCTGGACCAGGTGAAAATTTGCGGATTAGATTATCCGGCATTGAAGAAGAAGACATAGTAACTGGGTTTGTCCTGTCTAGTATTGCAAATCCAATACCTACTGTGAGTGAATTTGTGGCGCAGCTGCAAATCCTTGAATTGCTGGACAATGCTATTTTTACTGCTGGGTACAAGGCCGTTCTGCACATCCACTCTATTGTTGAAGAGTGTGAGGTTATTGAGCTCATACATGAAATTGATCCAAAGACAAAGAAACCTAAGAAAAAGAAAACTCTCTTTGTGAAGAATCGTGCATTTGTTGTGTGCCGAATTCAGGTTAGTAACTCAATATGCATTGAGAAATTTACTGATTTTCCACAACTTGGGAGATTCACTCTTCGTTCTGAAGGAAAAACTGTTGCAGTGGGAAAAGTCACAGTACATCACATCATTCCTGCACAGACAAATGGAGTGGCAGCATTGAGGCATAATTGA 1554 0.4144 MDIEEDIRSLQLESAEDNNGVGSPEDGKAEEVEKSDKMDEDSKQEVQEQPFQAEPKDKEIPPMQDEEDDVEITNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDERTIQKYEKEAKDKSRESWYMAYIMDTNEEERVKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADVGVLVISARKGEFETGYERGGQTREHVQLAKTLGVAKLLVVVNKMDDPTVMWSKERYDEIESKMIPFLKQSGYNVKKDVLFLPISGLIGTNIKVSVDKSICPWWDGPCLFEALDAVEVPPRDPKAPFRMPILDKFKDMGTVVMGKVESGTVREGDSLLVMPNKDQVKVVGVFIDENRVKRAGPGENLRIRLSGIEEEDIVTGFVLSSIANPIPTVSEFVAQLQILELLDNAIFTAGYKAVLHIHSIVEECEVIELIHEIDPKTKKPKKKKTLFVKNRAFVVCRIQVSNSICIEKFTDFPQLGRFTLRSEGKTVAVGKVTVHHIIPAQTNGVAALRHN* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g1009 517 CDD EF1_alpha 79 300 - -
Apr6g1009 517 MobiDBLite consensus disorder prediction 23 68 - -
Apr6g1009 517 CDD eRF3_II 306 387 - -
Apr6g1009 517 Pfam Elongation factor Tu GTP binding domain 75 288 IPR000795 GO:0003924|GO:0005525
Apr6g1009 517 PRINTS GTP-binding elongation factor signature 79 92 IPR000795 GO:0003924|GO:0005525
Apr6g1009 517 PRINTS GTP-binding elongation factor signature 158 168 IPR000795 GO:0003924|GO:0005525
Apr6g1009 517 PRINTS GTP-binding elongation factor signature 174 185 IPR000795 GO:0003924|GO:0005525
Apr6g1009 517 PRINTS GTP-binding elongation factor signature 218 227 IPR000795 GO:0003924|GO:0005525
Apr6g1009 517 Pfam Elongation factor Tu domain 2 319 385 IPR004161 GO:0005525
Apr6g1009 517 PANTHER BNAA06G12300D PROTEIN 2 500 - -
Apr6g1009 517 SUPERFAMILY Translation proteins 298 391 IPR009000 -
Apr6g1009 517 Gene3D Translation factors 304 389 - -
Apr6g1009 517 Pfam Elongation factor Tu C-terminal domain 392 499 IPR004160 -
Apr6g1009 517 CDD eRF3_C_III 393 499 - -
Apr6g1009 517 MobiDBLite consensus disorder prediction 1 68 - -
Apr6g1009 517 Gene3D Translation factors 394 501 - -
Apr6g1009 517 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 396 499 IPR009001 -
Apr6g1009 517 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 67 310 IPR027417 -
Apr6g1009 517 Gene3D - 58 299 IPR027417 -
Apr6g1009 517 PANTHER TRANSLATION FACTOR 2 500 - -
Apr6g1009 517 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 75 301 IPR000795 GO:0003924|GO:0005525
Apr6g1009 517 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 131 146 IPR031157 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g1009 Apr-Chr6 14798078 14809304 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g1009 77 499 Eukaryotic Initiation Factors Gene Family AT5G10630 36.682 3.35e-93 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g1009 K03267 - gmx:100793653 870.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g1009 6 14798078 14809304 Apr6g1009 6 14798078 14809304 ECH