Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g1008 ATGACTCCACGCGCCGATGAACACGAAAAAGACAATCTCTCCGCCACCGACGACGACGATGACGATGACTTCAAAGAGGACATGGCTGCGATTGCCCGAGCCTGCATGATCGCCGGCCACCACGCCAACAGCGACTCTGCCGCCGGTCCTAACCTCGACGTCCGTGCCGGTCAAATTCCGGCGGAAGACCCGCTCTTGGACTCCGGCGACGCCATCGTTCCGGTCACCACTGATTCCGACGATGAACAGGACGACCTCGAATGTCTCAAAAGAGTGCAAAGCCTCTACCAGCCTTTGTCTTCTATTCCGCCTCTGCCACCGCCGTTGACAGCCAAGTCGGATGATGACGACGTGGATGATTTTGAGACGGTTCGCGCCATCATGAAACGGTTTTCTAAGTACGGCGAAGGTCCACATGAAGGAAAAACCAAAACATTGCCTGAGGAGGATCAGACATCAATACCAGAATGTGATGGTGACATTGCTAAGGATTCAATCCATTATGAATCACATGGTGGTGACTTATGTCCTGTTTCTCAGGATCCTGATGAGATCACTGATTGGTTGACTGAGAACATGGAAGTACAGCATTTTGATTTTGATGAGAGTTGTCAACCTGATGCCTTCAAATCATCCAAATTACCAAAGAATAGAACAAGTTTTCCTCCTTCAGCTCATGCTGTTGTTGATGCTATCCAGAAGAACAGGTCTTTGCAGAGATTTCTTAGAAGTAAGTTGATTGAGCTCGAAGCTAAAATTGAGGAGAATAAACAGCTAAGGAACAAAGTTAAACTTCTTAAGGACTTCCAGCTTTCTTGCATTAGAAGAACAGGGCATGCGTTATCGCTGAAAAAGGATCCACGTGTTCAGTTAATATCAGCCAAAAAATCTTCTGCTCCAAAGAATTCAAAGAGCCATAAAAAAGTATCTGCAATGTGTTGTGGCCCGGAGGAGAATTCTCGTGTCGCTAATTATAAGATGGTACTGGAAAGATTTCCGCTTTCATTGGATAGGAAAAAATGGTCTAATGTAGAAAGAGAAAATCTTTTGAAAGGAATTAAGCAACAATTCCAAGAAATACTGCTTCAAATTTCTGTAGATAGAATAAGTTCAGAATGCTCATTTGGAGATGCAAATGACTTGGATGGCATAATTTCATCTGTTAAAGATCTTGAAATTACACCAGAGAGGATTAGAGAATTTTTACCTAAAGTTAATTGGGATCGGTTAGCTTCCATGTATGTTGTTGGCCGTACTGGTGCTGAATGTGAATCAAGGTTGGGTATTAAAATGCTCTATCGATCCATCCGTTTTTTTTGGGGGTGGGGGAAGAGGTGGTTGAATTGTGAAGATCCTTTGATCAACCAAGGCACATGGACTGGTGAAGAGGATAGGTCTCTTTTGCTTCTTGTCCAAGATATGGGCATCAGGAACTGGTTTGATATTGCTGTATCATTGGCCACAAACAGGACTCCATTTCAATGCTTGGCCCGATATCAACGGAGCTTAAATCCTTCCATGCTCAATAGTGAATGGACTGAGGAAGAAGATGCTCAACTCTGTTCTGCTGTGACATTTTTTGGTGAGAACGACTGGCAGTCTGTGGCTTCAGTTCTAGAACGGCGAACAGGAACCCAGTGCTCAAATAGATGGAAAAAATCCCTCTGTCCCGAGAGGAAAGGAAGCTTTACTCAAGAGGAGAATATACGCTTAACTGTAGCTGTCATGCTTTTTGGACGGAAATGGAATCAAATAGCCAAGTTTGTTCCTGGCCGGATCCAATCTCAGTGTAGGGACAGATACCTCAACAGTCTGGATCCTTCTTTGAAATGGGGAGGATGGACTGAGGAAGAGGATTTAAAATTAGAAGTTGCAATTGCAAAGCATGGATATTGCTGGTCTAAGGTAGCTGAAGAAGTGCCTCCCCGTACTGATTCTCAATGCCGGAAGAGATGGAAGGTGATATGTCCTGAACAAGTGCCCTTGCTTCAAGAAGCAAGAAAGAAGAAAAAGTCTATTGTTGCCAATAACTTTGTTGATCGAGAGTCTGAACGCCCAGCCCTTACACTGGATGATTTTCTACCGTTACATATGTTAGCTCCTAAATCTAGCGTTGGTGCTGCTCCGAATCACTGGAAGAAGCGCAAGAGGAAGTCAAGCAATGTTTCCAAGAAAATGAGATCTAGAAAACGTGTAAAAAAAGCTCGACATACTGAGGAAGTACAAGATGTAGGGGTACATAGTGATGATCAGGTCAAGAATTGTAGTGAAGAAGTACCAGGTTTTGCTAGCAAGGTTCCTGAGAAAATGAGGTCTAAAAAACATGCAAAAAGGACGCAAATTCATCCCAATGAAGTAGAGGATACAGTACAGGGTGTCAAGGTCAAGACTTGTGTCGAGAGTTCAGAGAGTCAATCTACCAGTAATGAGAGTTCTGAAAATCAAGATTGGGACAACGTAACTCTTGCATGTTTTATACAAAACAAATCGAAAAAGAAGCTATCTAAATGTACCAAAACTTTGAGTCAAGCTTCCCTTTCTCCTAGGACTACAGTTGTATTTAAGGAGGCTGATAATCAAATCCCATCTGGTGAGCAAGTGGGGTTGTCTCAGTCATTTGATACTACAGATGGTACTAAAGATTTGTTCGTGCAGCAGAATGTTGGTTCTGACAGACGAGTGGGAAAACCAGAAGATGCAAACACTTTGACGGGTGACGAAGATGATCCGCCTCTTGTGTCCCTTATGGGAAACAAACCAAAGAAAAGGAGTCAAGCTGCTAAAGGACGTGGTGCATTCTCTTCTTCCAAATTGAAAAAGGGATCTGCATTACCATGTGACGAGCATTGTGCAAACAAGCCAATCATCATCATATCTGACGATGGTGGGCCGTCAATGTCCAAGCATGTTGAAGAGGAGACTGTTTTGCATGGTGGTGTGGCTGAACACACAAACAATATGGAAGAAAAAGATGAAATCCTTTCTTCTTTCTTGCAAAACAGGACACAGAGACAGCGGAAACGACCTAGTAGGTATTCTTAA 3042 0.4343 MTPRADEHEKDNLSATDDDDDDDFKEDMAAIARACMIAGHHANSDSAAGPNLDVRAGQIPAEDPLLDSGDAIVPVTTDSDDEQDDLECLKRVQSLYQPLSSIPPLPPPLTAKSDDDDVDDFETVRAIMKRFSKYGEGPHEGKTKTLPEEDQTSIPECDGDIAKDSIHYESHGGDLCPVSQDPDEITDWLTENMEVQHFDFDESCQPDAFKSSKLPKNRTSFPPSAHAVVDAIQKNRSLQRFLRSKLIELEAKIEENKQLRNKVKLLKDFQLSCIRRTGHALSLKKDPRVQLISAKKSSAPKNSKSHKKVSAMCCGPEENSRVANYKMVLERFPLSLDRKKWSNVERENLLKGIKQQFQEILLQISVDRISSECSFGDANDLDGIISSVKDLEITPERIREFLPKVNWDRLASMYVVGRTGAECESRLGIKMLYRSIRFFWGWGKRWLNCEDPLINQGTWTGEEDRSLLLLVQDMGIRNWFDIAVSLATNRTPFQCLARYQRSLNPSMLNSEWTEEEDAQLCSAVTFFGENDWQSVASVLERRTGTQCSNRWKKSLCPERKGSFTQEENIRLTVAVMLFGRKWNQIAKFVPGRIQSQCRDRYLNSLDPSLKWGGWTEEEDLKLEVAIAKHGYCWSKVAEEVPPRTDSQCRKRWKVICPEQVPLLQEARKKKKSIVANNFVDRESERPALTLDDFLPLHMLAPKSSVGAAPNHWKKRKRKSSNVSKKMRSRKRVKKARHTEEVQDVGVHSDDQVKNCSEEVPGFASKVPEKMRSKKHAKRTQIHPNEVEDTVQGVKVKTCVESSESQSTSNESSENQDWDNVTLACFIQNKSKKKLSKCTKTLSQASLSPRTTVVFKEADNQIPSGEQVGLSQSFDTTDGTKDLFVQQNVGSDRRVGKPEDANTLTGDEDDPPLVSLMGNKPKKRSQAAKGRGAFSSSKLKKGSALPCDEHCANKPIIIISDDGGPSMSKHVEEETVLHGGVAEHTNNMEEKDEILSSFLQNRTQRQRKRPSRYS* 1014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g1008 1013 ProSiteProfiles Myb-like domain profile. 451 503 IPR001005 -
Apr6g1008 1013 CDD SANT 458 503 IPR001005 -
Apr6g1008 1013 ProSiteProfiles Myb-like domain profile. 559 605 IPR001005 -
Apr6g1008 1013 ProSiteProfiles Myb-like domain profile. 504 555 IPR001005 -
Apr6g1008 1013 Gene3D - 559 611 - -
Apr6g1008 1013 Gene3D - 509 558 - -
Apr6g1008 1013 ProSiteProfiles Myb-like domain profile. 606 656 IPR001005 -
Apr6g1008 1013 MobiDBLite consensus disorder prediction 704 744 - -
Apr6g1008 1013 SUPERFAMILY Homeodomain-like 585 656 IPR009057 -
Apr6g1008 1013 MobiDBLite consensus disorder prediction 709 734 - -
Apr6g1008 1013 Gene3D - 458 507 - -
Apr6g1008 1013 SMART sant 337 433 IPR001005 -
Apr6g1008 1013 SMART sant 610 658 IPR001005 -
Apr6g1008 1013 SMART sant 455 505 IPR001005 -
Apr6g1008 1013 SMART sant 559 607 IPR001005 -
Apr6g1008 1013 SMART sant 508 557 IPR001005 -
Apr6g1008 1013 MobiDBLite consensus disorder prediction 1 25 - -
Apr6g1008 1013 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 451 503 IPR017930 -
Apr6g1008 1013 MobiDBLite consensus disorder prediction 888 941 - -
Apr6g1008 1013 Gene3D - 613 659 - -
Apr6g1008 1013 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 504 559 IPR017930 -
Apr6g1008 1013 Pfam Myb-like DNA-binding domain 613 653 IPR001005 -
Apr6g1008 1013 Pfam Myb-like DNA-binding domain 560 603 IPR001005 -
Apr6g1008 1013 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 606 660 IPR017930 -
Apr6g1008 1013 Coils Coil 242 269 - -
Apr6g1008 1013 CDD SANT 614 653 IPR001005 -
Apr6g1008 1013 CDD SANT 511 555 IPR001005 -
Apr6g1008 1013 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 560 605 IPR017930 -
Apr6g1008 1013 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 16 426 - -
Apr6g1008 1013 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 444 929 - -
Apr6g1008 1013 CDD SANT 562 605 IPR001005 -
Apr6g1008 1013 SUPERFAMILY Homeodomain-like 507 601 IPR009057 -
Apr6g1008 1013 MobiDBLite consensus disorder prediction 134 153 - -
Apr6g1008 1013 Pfam Myb-like DNA-binding domain 459 520 - -
Apr6g1008 1013 SUPERFAMILY Homeodomain-like 457 513 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g1008 Apr-Chr6 14776970 14785424 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g1008 214 696 MYB-Related Transcription Factor Family AT3G18100 53.239 2.07e-170 513
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr6g1008 Myb_DNA-bind_6 1.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g1008 K09422 - gmx:100818474 1237.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g1008 6 14776970 14785424 Apr6g1008 6 14776970 14785424 ECH