Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g1007 ATGGGCATCAAGGATCTTCTCAGGTTCATGAAACCTTACATCGAACCCGTCCACATCAAGAAGTACGCTGGTAAACGCGTGGGTATTGATGCTTATTCATGGCTTCACAAAGGGGCTTATTCGTGTAGTATGGAGCTTTGTCTTGATTCTGATAGCGAAAGGAAGTTGCGATACATTGAATATTTTATGCACCGAGTTAACTTGCTTCGCTACTATAAAATAACCCCAGTTGTTGTTTTTGATGGTGGCAATGTTCCTTGCAAGGCAGCAACTGAGGAAGAGAGGAACAGAAAAAGAAGTGCTAATCGTGATTTGGCAATGGCGAAGCTCAAAGAAGGGAATGTTAGTGCAGCTTCAGATCTCTTCCAGAGAGCAGTGAATATTACTCCCCTTATGGCATATAAACTAATTCAGACTCTTAAATCAGAGAACATTGAGTTCATTGTAGCTCCATATGAAGCAGATGCTCAGTTAGCATACATGTCGAACCTTGAAGCAGAAAAAGGTGGAGTTGCAGCAGTGATCACAGAAGATAGTGATCTGATAGCATATGGCTGTCCAGCTATTATTTTTAAGATGGACCGTCATGGAAATGGTGAAAGAGTTGAGTTAGAGAAGGTTTTTTCTGCTGAATCTAGGAGACCTTCATTTCGTAGTTTTGATATGAAACTCTTCACAGGTATGTGTGTCTTAGCTGGCTGTGATTTTCTTCCATCTGTTCCTGGAATTGGTATTGCTCGAGCTCATGCCTTTGTTTCCAAGTATCAGAACCTAGATCGCATCTTGTCTGTGCTTAAGCTTGAGAAAGGAGATCAAATGCCTGAAGATTATGCCAAATCCTTTAAAGAGGCTGTTGCGGTCTTTCAACATGCTCGGATATATGATAACAATGCTAAAGAGCTTAAGCACATGAAACCCCTTCCAGAAAATTTTCTAGAGTCACTTGATGGAAAACTTGATTTCTTGGGACCAGAAATTCCCCCATATGTAGTCACAGCAATAGCTGAAGGAAACTTGAATCCATCAACTAAGGAACCCTTTGATAAGTCTAAATGTTCTAAATTTTTTCTACGCCCCAATGATCTCCAAAGCTTTGATCAAGTCCATAAAGCTGAAGTTCCTGCACCATTTAGACAGGAGAATAGCTTTTCAATCATTGGTTCCAGTTGCACCAGAGAAAAAAGTACAGTCATAAAATTATTTTTCTCCATAGTGACAAAGCTCTTAGATGAAGAGAAGTATTCTGCTGAAGCATTGGCACTTCAGAAACTAATCATGCCATTGGAAAAAAATGGAATAGAAGAAAAGACCATTGTAGCTGGTGACACTCCTTTGAAGGTTCCTGCCAACAACCCATTTAGGATAAGACAACCTAAGGAAATCTCTGGATATCTTTCAAGAAGAGGGGTCTAA 1413 0.4013 MGIKDLLRFMKPYIEPVHIKKYAGKRVGIDAYSWLHKGAYSCSMELCLDSDSERKLRYIEYFMHRVNLLRYYKITPVVVFDGGNVPCKAATEEERNRKRSANRDLAMAKLKEGNVSAASDLFQRAVNITPLMAYKLIQTLKSENIEFIVAPYEADAQLAYMSNLEAEKGGVAAVITEDSDLIAYGCPAIIFKMDRHGNGERVELEKVFSAESRRPSFRSFDMKLFTGMCVLAGCDFLPSVPGIGIARAHAFVSKYQNLDRILSVLKLEKGDQMPEDYAKSFKEAVAVFQHARIYDNNAKELKHMKPLPENFLESLDGKLDFLGPEIPPYVVTAIAEGNLNPSTKEPFDKSKCSKFFLRPNDLQSFDQVHKAEVPAPFRQENSFSIIGSSCTREKSTVIKLFFSIVTKLLDEEKYSAEALALQKLIMPLEKNGIEEKTIVAGDTPLKVPANNPFRIRQPKEISGYLSRRGV* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g1007 470 Pfam XPG N-terminal domain 1 100 IPR006085 GO:0004518
Apr6g1007 470 CDD PIN_EXO1 1 208 IPR044752 GO:0046872
Apr6g1007 470 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 220 349 IPR036279 -
Apr6g1007 470 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Apr6g1007 470 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 76 95 IPR006084 -
Apr6g1007 470 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 140 157 IPR006084 -
Apr6g1007 470 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 225 240 IPR006084 -
Apr6g1007 470 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 461 IPR006084 -
Apr6g1007 470 CDD H3TH_FEN1-like 225 295 - -
Apr6g1007 470 SMART xpgn3 1 102 IPR006085 GO:0004518
Apr6g1007 470 Pfam XPG I-region 144 235 IPR006086 GO:0004518
Apr6g1007 470 Gene3D - 218 291 - -
Apr6g1007 470 PANTHER 5'-3' EXONUCLEASE FAMILY PROTEIN 1 461 - -
Apr6g1007 470 SUPERFAMILY PIN domain-like 2 235 IPR029060 -
Apr6g1007 470 Gene3D - 1 213 - -
Apr6g1007 470 ProSitePatterns XPG protein signature 2. 144 158 IPR019974 GO:0016788
Apr6g1007 470 SMART xpgineu 141 213 IPR006086 GO:0004518
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g1007 1 315 Core DNA Replication Machinery Family AT5G26680 24.332 9.60e-15 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g1007 K10746 - gmx:100817932 752.281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g1007 6 14760175 14768297 Apr6g1007 6 14760175 14768297 ECH