Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g1003 ATGGATCATCACAAAAAGGGTTCAGCAGAGGTAGAGTTTTTTACCGAGTATGGAGAGGCAAGTAGGTATGAAGTCCAAGAAGTGATTGGAAAAGGGAGTTATGGTGTTGTGTGTTCTGCTAATGACACTCACACTGGGGAAAAGGTTGCAATAAAGAAAATCAATGATGTTTTTGAGCATGTATCAGATGCCACAAGAATTCTTAGAGAAATTAAACTCCTTCGATTGCTTCGACATCCTGATATAGTTGAAATCAAGCATATAATGCTTCCACCTTCAAGAAGAGAGTTCAAGGATGTCTATGTTGTGTTTGAGTTGATGGAGAGTGATCTTCATCAAGTAATTAAGGCAAATGATGATCTTACTCCTGAGCACTACCAATTTTTCTTGTACCAACTTCTTCGGGGCCTAAAATTTATACATACGGCAAATGTGTTTCATCGTGACCTGAAGCCAAAAAATATTCTAGCTAATGCTGATTGCAGACTAAAAATATGTGATTTTGGGCTTGCTCGAGTTTCATTTAACGAGGCTCCATCAGCTATATTCTGGACTGACTATGTTGCAACTCGGTGGTATCGTGCACCTGAACTTTGTGGTTCTTTTTTCTCAAAATATACCCCAGCAATTGATATTTGGAGCATTGGATGCATATATGCAGAAATGCTCAGTGGAAAACCATTGTTTCCTGGGAAAAATGTGGTGCACCAATTGGATCTCATAACTGACTTGCTTGGTACTCCTCCAGCTGAAACCATTTCGAAGATCCGAAATGAGAAAGCTAGAAGGTACCTTAGTAGCATGCGAAAAAAGCAACCAGTTCCATTCTCTAAAAAATTTCCAAATGCAGATTCATCGGCTCTTCATTTACTAGGGCGGTTACTTGCATTTGATCCCAAAGACCGTCCAACAGCTGAAGAGGCACTAAGTGATCCTTATTTCCATGGTTTGTCAAGTGTGGATCGTGAGCCATCCACTCAACCTATTTCAAAATTTGAGTTTGAGTTTGAGAGAAAAAAATTGACCAAAGATGATGTTAGAGAGTTGATTTATCGAGAGGTATGCCCTTACATTTCAATGACACAGATTTTAGAGTACCATCCCCAAATGCTCCAAGAATATCTTCAAGGTGGAGATCAAACAAGCTTTATGTATCCAAGTGGAGTTGATCGATTCAAGCGACAATTTGCACATCTTGAAGAGCATTACAGCAAAGGTGAACGAAGCACTCCAATATTGTTGAGACATCATGCCTCCTTACCTAGAGAACGAGTTCCTAATTCAAAGGATGAAAATAATCAAGACAATGATGCTGAAAATCCAATTGGATTAAATGCTCAAAGTTCTCCAGGGTCTGATGTGATAGATTCTGGAAACTACAGTGCACGTAGCCTGTTGAAGAGTGCCAGCATTAGTGGTTCAAAGTGCATAGATGCGAAACAAAATAAAGATGCAGAGGAGTCAATTGCAAAGGTCAATGATGAGACCATGGATGAGTTGATAGAGAAGGTTGCTGCCGTACCTGCTTAG 1530 0.398 MDHHKKGSAEVEFFTEYGEASRYEVQEVIGKGSYGVVCSANDTHTGEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFKDVYVVFELMESDLHQVIKANDDLTPEHYQFFLYQLLRGLKFIHTANVFHRDLKPKNILANADCRLKICDFGLARVSFNEAPSAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIYAEMLSGKPLFPGKNVVHQLDLITDLLGTPPAETISKIRNEKARRYLSSMRKKQPVPFSKKFPNADSSALHLLGRLLAFDPKDRPTAEEALSDPYFHGLSSVDREPSTQPISKFEFEFERKKLTKDDVRELIYREVCPYISMTQILEYHPQMLQEYLQGGDQTSFMYPSGVDRFKRQFAHLEEHYSKGERSTPILLRHHASLPRERVPNSKDENNQDNDAENPIGLNAQSSPGSDVIDSGNYSARSLLKSASISGSKCIDAKQNKDAEESIAKVNDETMDELIEKVAAVPA* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g1003 509 Pfam Protein kinase domain 23 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr6g1003 509 MobiDBLite consensus disorder prediction 418 456 - -
Apr6g1003 509 ProSitePatterns Protein kinases ATP-binding region signature. 29 53 IPR017441 GO:0005524
Apr6g1003 509 ProSitePatterns MAP kinase signature. 58 161 IPR003527 GO:0004707|GO:0005524|GO:0006468
Apr6g1003 509 SUPERFAMILY Protein kinase-like (PK-like) 18 318 IPR011009 -
Apr6g1003 509 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 8 457 - -
Apr6g1003 509 ProSiteProfiles Protein kinase domain profile. 23 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr6g1003 509 SMART serkin_6 23 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr6g1003 509 MobiDBLite consensus disorder prediction 418 436 - -
Apr6g1003 509 MobiDBLite consensus disorder prediction 437 456 - -
Apr6g1003 509 Gene3D Transferase(Phosphotransferase) domain 1 109 337 - -
Apr6g1003 509 Gene3D Phosphorylase Kinase; domain 1 38 357 - -
Apr6g1003 509 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 8 457 - -
Apr6g1003 509 CDD STKc_TDY_MAPK 22 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g1003 Apr-Chr6 14721243 14726691 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g1003 5 497 MAP Kinase Gene Family AT1G73670 75.644 0.0 782
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Apr6g1003 Pkinase 7.3e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g1003 - - gmx:100776784 850.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g1003 6 14721243 14726691 Apr2g1564 2 21489096 21494633 ECH
Apr6g1003 6 14721243 14726691 Apr6g1003 6 14721243 14726691 ECH