Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0983 ATGGAGAGGGAATTTTTTGGCTTAAGCTCCAAAAATGGTGCATGGATTACTATGAAAGAAGATGGTGCCAACAAACCAAAAGACCCAGTGAGGAGTTCAGGAATGCAGTGGTCATTCTCAAACAAGGTCTCGGTTCTTCCTCAATTCCTGTCCTTCAAGAACAATCAGGAAGATAGAGTGAGAAAGACTCTTCTTGATCCACTAGCCTCATCTGGATATATGAACATGCCACCTAAAGATGCTTTTGACTCTAACCAAAAACCATTCTTAGGTGTGACCCAGAATAATTTGTCCATAGGAAAGCAGGCAGGAAACAAGCATGGAATGTCAATTTATCCTCAGCAATGTTCAGATGCACAATCAGCATCCCTTCAGGAAGCAACAATATTTTCAGTTTCCAACCAATCAAATCTTGCTACTACAGGACTAAACATGGTCAATTCAGTCATAAAACCACAAGCTCCTGGTTCCAAATCCTCTGGCACACCTGTATCTGTTCTTCCACCAATAGGTTCCATTGTTGGATCTACTGACTTAAGCAGGAATTGTTCCAAATCCACTGGCACACCTACTCAGCTTACCATTTTCTATGCTGGTTCAGTATGCGTTTTTGATGACATAACTCCTGAGAAGGCCAAGGCTATCATGTTAATGGCAGGAAATAGGTCTACTCCAATTCAGAACATGGCAGTTTCCACAGCTAAATTTCAGCCAACAATCTCAATTCCCTCCAAAGATGATGGTTTCATTATAAGTCAATCCTATCCCTCCTCACCCTTGCCAAGCCCTCTCCCACTAACTTCTCTAGCCAATTCTCAATCTATAGGAGGATCTTCTAGCAACAATGAACTTGCAAAAATAAGACCAATAGGACCTTCATCTGCCCCTCCTAACTATTTGGAATCTCCTATTGTTGTTGCTTCTGCTGCTACAAAAATGGTTCAACGAGTATGCTTGCCTCAGGCACGTAAAGCATCCTTGACTCGGTTTTTGGAGAAGAGAAAGGGAAGGATGACGAGCACATCACCATACTTCCATATGAGCAAGAAATCACCCGAATGCAACTCTCTTGGATCAGACAGTGTTAGTTTCTCTTTGAACTTCTCTGGTTCCTGTCCTCTACCAGCTACCAACTAG 1137 0.4239 MEREFFGLSSKNGAWITMKEDGANKPKDPVRSSGMQWSFSNKVSVLPQFLSFKNNQEDRVRKTLLDPLASSGYMNMPPKDAFDSNQKPFLGVTQNNLSIGKQAGNKHGMSIYPQQCSDAQSASLQEATIFSVSNQSNLATTGLNMVNSVIKPQAPGSKSSGTPVSVLPPIGSIVGSTDLSRNCSKSTGTPTQLTIFYAGSVCVFDDITPEKAKAIMLMAGNRSTPIQNMAVSTAKFQPTISIPSKDDGFIISQSYPSSPLPSPLPLTSLANSQSIGGSSSNNELAKIRPIGPSSAPPNYLESPIVVASAATKMVQRVCLPQARKASLTRFLEKRKGRMTSTSPYFHMSKKSPECNSLGSDSVSFSLNFSGSCPLPATN* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0983 378 SMART tify_2 186 221 IPR010399 -
Apr6g0983 378 ProSiteProfiles Tify domain profile. 186 221 IPR010399 -
Apr6g0983 378 Pfam tify domain 189 220 IPR010399 -
Apr6g0983 378 Pfam Jas motif 320 344 IPR018467 -
Apr6g0983 378 MobiDBLite consensus disorder prediction 266 287 - -
Apr6g0983 378 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 35 257 IPR040390 -
Apr6g0983 378 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 256 378 IPR040390 -
Apr6g0983 378 MobiDBLite consensus disorder prediction 266 292 - -
Apr6g0983 378 PANTHER JASMONATE ZIM-DOMAIN PROTEIN 35 257 - -
Apr6g0983 378 PANTHER JASMONATE ZIM-DOMAIN PROTEIN 256 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0983 Apr-Chr6 14449153 14455168 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0983 35 362 Tify Gene Family AT3G17860 37.500 2.53e-44 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Apr6g0983 tify 1.3e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0983 K13464 - gmx:100807288 513.842