Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0980 ATGCCACTGATTCACACTACTCCACCATCCCACTATGCTATTGCTACCCTCTACCCGGTTACAAGCTATTCCAATGCATCATCATATTCCACCTTTGGTTCCAAGTTTATGCACAAAACGGGTCATACCCAAAACCAAAGTTTTGGTTTTTCCACCACCACCAACAGGAATCGCTCTCGTGTTGCACTAATCAGAGCCAAAGGAGGAACCGATTACTATTCCACTTTGAATGTTAACCCTAATGCTACTCTTCAAGAAATCAAGAGCTCTTATCGCAAACTGGCTCGCAAGTATCATCCAGATATGAACAAAAGCCCTGGGGCTGAGGAAAAGTTCAAGGAAATAAGTGCTGCATATGAGGTCCTATCAGATGATGAGAAAAGATCTTTATATGATCGCTTTGGTGAGTCAGGTCTACAAGGAGAAAATGGAGAGTCAGCTGGTGCTTCAGGGGTTGATCCTTTTGATTTATTCGATACATTCTTTGGTCATGCTGATGGACTTTTTGGAGATGCTGATGAAGGGGGCATCAACTTCAATTTCAGAAACAAGAGAAACCGCAGTCGTGATATTCGGCAAGACCTTCATTTGAGCTTTGAAGAATCCATTTTTGGAGGACAGAGGGAGATTGAAGTTTCTTGTTTTCAGACATGTAATACTTGTGATGGTACAGGGGCTAAATCAAGGAGTTGCATTAAGCAATGCACAAATTGTGGTGGCAGAGGGGGAGAAATGAAAAGTCAGAGAACACCTTTTGGAATGATGTCTCAGGTTTCTACCTGTTCTAAGTGTGGTGGTCTTGGCAAAATAATCACTGATCTCTGTCGAAAGTGTGATGGCAGTGGTCAGGTTCAATCTAAACAAACAATGGAAGTGGATATTCCTCCAGGAGTCAATGATGGAGACACGATGCAAATTCGAGGGCAAGGGAATTTTGATAAGAAGAGGAAAATTATTGGGGATCTTTTTGTTGTCCTTCATGTAGATGAAAAGCAAGGAATTTGGAGAGAAGGTCTTCATTTGTACTCAAAGATTAACATTGACTTCACAGATGCAATACTGGGATCAGTCAAAAAGGTAGAAACTGTTGAAGGTTTAAGGGATCTTCAAATTCCCCCAGGGATTCAACCTGGAGATTCCGTGAAGTTGTCACGATTAGGAGTTCCAGACATGAATAAACCATCTGTTCGAGGGGATCATTACTTCATTGTGAATGTTCTTATTCCAAAGCATCTCAGTGACACGGAACGCATACTTGTTGAGCAGTTAGCTTCACTAAGAGCATCTAGCAAACGTGATTCGCTATCATCTAATGACATCAGGATACCTAAAGGAAAATTCAGTGAATTCTTAAAGAGAGGTCCAAAAGATGATGCTTCAAGCAAGGGAAGAAAAAATGTTGACTCTGTGTGGAAATCAGTCAAGAACTTCTTAAGGAGAGGACAGTCTGAAGAAAGGTTTGCTTCAGTTAGTCTCGATGCATCAGGGTCATCATGGAGACCTAGCCACCAAAATCATTCTGTCCCTGATTCTTTTTTTTTTGTTTTCATTTTAACTTGGATTTTCGCCTCTATAGCTAAGTCTAAGTACTCAATATTTCAGAAAAGAACTCAGTCCTTTAATAGAACACAATGA 1635 0.408 MPLIHTTPPSHYAIATLYPVTSYSNASSYSTFGSKFMHKTGHTQNQSFGFSTTTNRNRSRVALIRAKGGTDYYSTLNVNPNATLQEIKSSYRKLARKYHPDMNKSPGAEEKFKEISAAYEVLSDDEKRSLYDRFGESGLQGENGESAGASGVDPFDLFDTFFGHADGLFGDADEGGINFNFRNKRNRSRDIRQDLHLSFEESIFGGQREIEVSCFQTCNTCDGTGAKSRSCIKQCTNCGGRGGEMKSQRTPFGMMSQVSTCSKCGGLGKIITDLCRKCDGSGQVQSKQTMEVDIPPGVNDGDTMQIRGQGNFDKKRKIIGDLFVVLHVDEKQGIWREGLHLYSKINIDFTDAILGSVKKVETVEGLRDLQIPPGIQPGDSVKLSRLGVPDMNKPSVRGDHYFIVNVLIPKHLSDTERILVEQLASLRASSKRDSLSSNDIRIPKGKFSEFLKRGPKDDASSKGRKNVDSVWKSVKNFLRRGQSEERFASVSLDASGSSWRPSHQNHSVPDSFFFVFILTWIFASIAKSKYSIFQKRTQSFNRTQ* 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0980 544 Gene3D - 189 324 - -
Apr6g0980 544 SUPERFAMILY HSP40/DnaJ peptide-binding domain 190 328 IPR008971 GO:0006457|GO:0051082
Apr6g0980 544 SUPERFAMILY Chaperone J-domain 69 171 IPR036869 -
Apr6g0980 544 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 205 285 IPR036410 -
Apr6g0980 544 ProSitePatterns Nt-dnaJ domain signature. 112 131 IPR018253 -
Apr6g0980 544 SMART dnaj_3 70 127 IPR001623 -
Apr6g0980 544 CDD DnaJ 71 124 IPR001623 -
Apr6g0980 544 PRINTS DnaJ domain signature 73 91 IPR001623 -
Apr6g0980 544 PRINTS DnaJ domain signature 91 106 IPR001623 -
Apr6g0980 544 PRINTS DnaJ domain signature 107 127 IPR001623 -
Apr6g0980 544 PRINTS DnaJ domain signature 127 146 IPR001623 -
Apr6g0980 544 SUPERFAMILY HSP40/DnaJ peptide-binding domain 336 417 IPR008971 GO:0006457|GO:0051082
Apr6g0980 544 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 78 432 - -
Apr6g0980 544 PANTHER EXPRESSED PROTEIN 78 432 - -
Apr6g0980 544 Gene3D - 335 426 - -
Apr6g0980 544 Hamap Chaperone protein DnaJ [dnaJ]. 68 477 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Apr6g0980 544 Pfam DnaJ C terminal domain 192 409 IPR002939 -
Apr6g0980 544 ProSiteProfiles Zinc finger CR-type profile. 205 287 IPR001305 GO:0031072|GO:0051082
Apr6g0980 544 Gene3D - 218 282 - -
Apr6g0980 544 ProSiteProfiles dnaJ domain profile. 71 135 IPR001623 -
Apr6g0980 544 Gene3D DnaJ domain 69 171 IPR036869 -
Apr6g0980 544 CDD DnaJ_C 190 412 - -
Apr6g0980 544 CDD DnaJ_zf 218 282 IPR001305 GO:0031072|GO:0051082
Apr6g0980 544 Pfam DnaJ central domain 218 282 IPR001305 GO:0031072|GO:0051082
Apr6g0980 544 Pfam DnaJ domain 71 132 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0980 Apr-Chr6 14400678 14407076 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0980 72 132 C2H2 Transcription Factor Family AT1G74250 41.791 3.18e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0980 K03686 - gmx:100782135 859.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0980 6 14400678 14407076 Apr6g0980 6 14400678 14407076 ECH