Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0974 ATGAGCTTGCAACATCGGAGAGCGAGAAGGGATTGGTTAAGGGTTCCATCACAAGGTGCTACTCGTCAAGAATGGGTTCCTAGAGGGAGTGCAGCATCCACTACTGTTTTACAGCCATCAAATTTGCATTTAAATCACAATGCTAATGTTGATGCAAGTTCTTCCAATCATGGGGTGGCCGTTGCTTCGCGGGTGACTCCCCATAGGAGCAATCATGGGAATCATAGTATGGAAAGGGATAAAGGGAGGAGTGAGAATCACGAGGGGAAGGGGTTGGAATTTAGAGACTCTAGTTTGCCTCAATTGGTGCAAGAGATTCAGGAGAAGCTTATGAAAGGTACTGTGGAATGCATGATTTGCTATGACATGGTCCGGAGGTCGGCACCAGTTTGGTCTTGCTCCAGCTGCTACTCTATCTTTCACTTGAACTGCATCAAAAAATGGGCTCGGACGCCCACCTCGGTTGATTTGTCTGCGGAGAAGAATCAAGGGTTTAATTGGCGGTGTCCTGGTTGTCAGTCTGTGCAGCTTATGTCCTCAAAGGAGATTAGGTATCTTTGTTTTTGTGGAAAGAGGATAGACCCTCCATCTGATTTATATTTGACTCCCCATTCATGTGGAGAACCGTGTGGGAAGTCTCTTGAGAGAAAGTTGCTGGTTGCTGAAGGGAATAAGGATGATCTTTGCCCCCATGTTTGTGTCTTGCAATGCCATCCGGGTCCATGCCCTCATTGTAAAGCATTTGCCCCTCCACGTTTGTGCCCTTGTGGGAAGAAAATGGTTACCACCCGTTGCTCTGATCTGCAGTCTGTTCTTACTTGTGGTCAATGTTGTGATATGCTTCTTGAATGTGGGCGTCATCACTGTGAACACATTTGTCATGTGGGTCCTTGTGATCCTTGTCAGGTTCTAGTCAATGCCTCTTGCTTTTGCAGTAAAATGATGGAGGTTATTCCTTGTGGTGATATGGCTGTAAAGGGTGAAATTGAAGCGGAAGATGGTGTATTTTCTTGTGGTTCCAATTGTGGAAAGAAACTTAGCTGCGGTAATCATATCTGTAGTGAAATTTGCCATCCAGGAAGTTGTGGGGAATGTGCATTTTTACCAAGCCAGGTTAAAACATGTTGTTGTGGGAAAAAAAGGTTGGAGAATGAACGTTGGAGTTGTTTGGATTCAGTACCTACATGCTCTCAAGTCTGTGGCAAGCTCCTTTGTTGTGGGATGCATCATTGTAAAGAGCCCTGTCACGTTGGGGAATGTCCACCTTGTTTGGTTCTAGTTTCACAGAAGTGTCGATGTGGGTCTACTTCTCGAAATGTGGAGTGCTATAAGACTATAATGGAGAGTGGAAAATTTACATGTGAAAAGCCTTGTGGAAGAAAAAAGAATTGTGGAAGGCACCGATGCAGTGAAAGGTGTTGTCCACTTTCAAATTCAAATAATAGTTTTAATGGGGATTGGAATCCTCATTTTTGTTCCATGCCATGTGGAAAGAAGCTAAGATGTGGCCAACATATGTGTGAATCTTTGTGTCACACTGGTCATTGTCCACCTTGTCTTGAAACAATCTTCACTGATTTGACTTGTGCTTGTGGAAGGACTTCAATCCCTCCTCCTCTACCTTGTGGTACACCACTTCCCTCATGTCAGCTTCCATGTTCAGTTCCTCAGCCATGTGGACATTCAGGCTCACATAGTTGTCATTTTGGAGATTGCCCTCCTTGTTCAGTGCCCGTAGCAAAAGAATGTATCGGTGGGCATGTGGTTCTCAGGAACATACCTTGTGGTTCTAAGGATATTAGATGTAATAATCCTTGTGGGAAGACTAGACAATGTGGTTTACATGCATGTGGCAGAATATGTCACCCCCCACCATGTGATAATTTATCTGGTGTTGTACAAGGTTTCCTTGCACCATGTGGCCAAACATGTCGTGCTCCAAGGACAAGCTGTCAGCATATGTGTATGGCTCCATGTCACCCTTCATCGCCATGTCCAAATACAAGATGTGAATTCCCTGTTATGATTACTTGTTCTTGTGGCCGGATTACAACAAATGTTCCTTGTGATGCTGGTGGTAGCAATAACAATTATACTGTCGATGCCATACATGAAGTTTCCATTATTCAAAAGTTGCCTGTGCCACTTCATCCAGTTGATGCAAATGGCCAAAAAGTTCCCCTTGGACAAAGAAAGTTGATGTGTGATGATGAATGTGCTAAGTTGGAGCGTAAAAGGGTTATTGCTGATGCTTTTGACATTACTGCTTCAAGTCTGGATTCCCTCCATTTTGGTGACAACTCCGCTAATGAATTGCTTTTTGATTTTATTAGACGTGATCTAAAATGGGTTTTAGCTGTTGAGGAGAGATGCAAGATTTTAGTGCTTGGCAAGAGCAGAGGAACTACACATGGTTTAAAATTCCACGTCTTTTGTCCTATGCCAAAGGATAAAAGAGATGCAGTGAGGTTGATTGCTGAAAGATGGAAGCTTGCAGTGAAATCTGCCGGTTGGGAGCCAAAGCGATTTATCGTTATCTCTGTTACCCCAAAATCAAAGGCCCCATCTCATGTGATAGGGGTTCAGGGTACCACAACTTTAAATGCTCCCCTTCCTCCTACATTTGATCCTTTGGTAGATATGGACCCGCAGCTTGTTGTCTCATTTCCAGACTTACCAAGTGATGCTGATATTCGAGCCTTGGTGTTGAGGTTTGGTGGTGAGTGTGAGCTTGTTTGGTTGAATGACAAGAATGCCTTGGCTGTTTTTCATGATCCTGCCCGAGCTGCAACTGCAATGAGGAGGTTGGATCATGGAACAGTTTATCAGGGAGCTGTTTTGTTTGCCCCAGATGTTGGGACATCGGCGACATCTTCAGTTACCAATGCCTGGGGAGGAGCACTGCTGGCACTGAAAGTTAACCCGTCAAAAAAGGCTATGGTTCAAGACTCTAGTTGGAAGGGAGATTCTCAGGGTGATGAAGAATGGTCAAGTGGTTCTGCTAATCTGCTACCATCTGTTAGGAAGAAAGAAGCACCTATAATTGGTTCTTTAAATCGTTGGAATGTCTTAGACCAGGAATAG 3084 0.4423 MSLQHRRARRDWLRVPSQGATRQEWVPRGSAASTTVLQPSNLHLNHNANVDASSSNHGVAVASRVTPHRSNHGNHSMERDKGRSENHEGKGLEFRDSSLPQLVQEIQEKLMKGTVECMICYDMVRRSAPVWSCSSCYSIFHLNCIKKWARTPTSVDLSAEKNQGFNWRCPGCQSVQLMSSKEIRYLCFCGKRIDPPSDLYLTPHSCGEPCGKSLERKLLVAEGNKDDLCPHVCVLQCHPGPCPHCKAFAPPRLCPCGKKMVTTRCSDLQSVLTCGQCCDMLLECGRHHCEHICHVGPCDPCQVLVNASCFCSKMMEVIPCGDMAVKGEIEAEDGVFSCGSNCGKKLSCGNHICSEICHPGSCGECAFLPSQVKTCCCGKKRLENERWSCLDSVPTCSQVCGKLLCCGMHHCKEPCHVGECPPCLVLVSQKCRCGSTSRNVECYKTIMESGKFTCEKPCGRKKNCGRHRCSERCCPLSNSNNSFNGDWNPHFCSMPCGKKLRCGQHMCESLCHTGHCPPCLETIFTDLTCACGRTSIPPPLPCGTPLPSCQLPCSVPQPCGHSGSHSCHFGDCPPCSVPVAKECIGGHVVLRNIPCGSKDIRCNNPCGKTRQCGLHACGRICHPPPCDNLSGVVQGFLAPCGQTCRAPRTSCQHMCMAPCHPSSPCPNTRCEFPVMITCSCGRITTNVPCDAGGSNNNYTVDAIHEVSIIQKLPVPLHPVDANGQKVPLGQRKLMCDDECAKLERKRVIADAFDITASSLDSLHFGDNSANELLFDFIRRDLKWVLAVEERCKILVLGKSRGTTHGLKFHVFCPMPKDKRDAVRLIAERWKLAVKSAGWEPKRFIVISVTPKSKAPSHVIGVQGTTTLNAPLPPTFDPLVDMDPQLVVSFPDLPSDADIRALVLRFGGECELVWLNDKNALAVFHDPARAATAMRRLDHGTVYQGAVLFAPDVGTSATSSVTNAWGGALLALKVNPSKKAMVQDSSWKGDSQGDEEWSSGSANLLPSVRKKEAPIIGSLNRWNVLDQE* 1028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0974 1027 MobiDBLite consensus disorder prediction 46 61 - -
Apr6g0974 1027 MobiDBLite consensus disorder prediction 46 93 - -
Apr6g0974 1027 CDD NF-X1-zinc-finger 549 597 - -
Apr6g0974 1027 ProSiteProfiles Zinc finger PHD-type profile. 114 175 IPR019787 -
Apr6g0974 1027 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 64 1027 IPR034078 GO:0003700
Apr6g0974 1027 ProSiteProfiles Zinc finger RING-type profile. 117 173 IPR001841 -
Apr6g0974 1027 CDD NF-X1-zinc-finger 396 444 - -
Apr6g0974 1027 Pfam NF-X1 type zinc finger 348 365 IPR000967 GO:0005634|GO:0008270
Apr6g0974 1027 Pfam NF-X1 type zinc finger 464 475 IPR000967 GO:0005634|GO:0008270
Apr6g0974 1027 Pfam NF-X1 type zinc finger 284 302 IPR000967 GO:0005634|GO:0008270
Apr6g0974 1027 Pfam NF-X1 type zinc finger 612 627 IPR000967 GO:0005634|GO:0008270
Apr6g0974 1027 Pfam NF-X1 type zinc finger 559 576 IPR000967 GO:0005634|GO:0008270
Apr6g0974 1027 Pfam NF-X1 type zinc finger 406 423 IPR000967 GO:0005634|GO:0008270
Apr6g0974 1027 Pfam NF-X1 type zinc finger 502 519 IPR000967 GO:0005634|GO:0008270
Apr6g0974 1027 CDD NF-X1-zinc-finger 602 655 - -
Apr6g0974 1027 SMART znfxneu3 651 672 IPR000967 GO:0005634|GO:0008270
Apr6g0974 1027 SMART znfxneu3 464 498 IPR000967 GO:0005634|GO:0008270
Apr6g0974 1027 SMART znfxneu3 406 425 IPR000967 GO:0005634|GO:0008270
Apr6g0974 1027 SMART znfxneu3 348 367 IPR000967 GO:0005634|GO:0008270
Apr6g0974 1027 SMART znfxneu3 229 247 IPR000967 GO:0005634|GO:0008270
Apr6g0974 1027 SMART znfxneu3 559 577 IPR000967 GO:0005634|GO:0008270
Apr6g0974 1027 SMART znfxneu3 284 303 IPR000967 GO:0005634|GO:0008270
Apr6g0974 1027 SMART znfxneu3 612 642 IPR000967 GO:0005634|GO:0008270
Apr6g0974 1027 SMART znfxneu3 502 521 IPR000967 GO:0005634|GO:0008270
Apr6g0974 1027 CDD NF-X1-zinc-finger 338 383 - -
Apr6g0974 1027 SUPERFAMILY RING/U-box 107 176 - -
Apr6g0974 1027 PANTHER NF-X1-TYPE ZINC FINGER PROTEIN NFXL1 64 1027 - -
Apr6g0974 1027 MobiDBLite consensus disorder prediction 1 31 - -
Apr6g0974 1027 MobiDBLite consensus disorder prediction 982 1002 - -
Apr6g0974 1027 CDD RING-CH-C4HC3_NFX1 116 173 - -
Apr6g0974 1027 CDD NF-X1-zinc-finger 492 544 - -
Apr6g0974 1027 CDD NF-X1-zinc-finger 274 322 - -
Apr6g0974 1027 Coils Coil 1024 1027 - -
Apr6g0974 1027 MobiDBLite consensus disorder prediction 71 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0974 Apr-Chr6 14320606 14324562 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Apr6g0974 zf-NF-X1 1.9 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0974 K12236 - gmx:100819219 1710.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0974 6 14320606 14324562 Apr6g0974 6 14320606 14324562 ECH