Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0971 ATGGCCCTCGTCCGCCACCGCCGCCACCCCAACCTCCGCCTCCCCCTCCTAGAATCCTCCGAACGCCGTCCTCGATTCCCTCTACCCCTCCCACCAACCGCCACAAAACCCTCCGCCGCCACCGGCTGCGCCGACGCTATCTCCGCTGGCGACCTCGAGAAACTCGCCGTGCTCGGCCACGGAAACGGAGGCACCGTCTACAAGGTCCGCCACAAGGTCACTTCCGCCATCTACGCGCTGAAAGTCATCCACAGCGTCACCGACTCCACTACGCGCCGCCGTGCTCTGTCGGAAAGCACCATCCTCAGCCGCGCCGCCGATTGCCCCCACGTCGTTCGCTACCACGGGTCCTTCGAGAAGCCCTCCGGCGACGTGGAAATTCTAATGGAGTACGTGGACGGTGGCAGCCTCGAAACCGCCCTGAAAAAAGACGGCACGTTCTCGGAAGAGAGACTGGCAGCGGTGGCGCGTGACGTGCTCAACGGCCTCGCGTACCTGCACGCGCGCAAGATCGCGCACCGTGACATCAAGCCGGCGAACATCCTCGTAAACACCGAAGGGGAAGTTAAGATTGCGGACTTTGGTGTCAGCAAGCTCCTGTGTCGCACGCTCGAATCGTGTAATTCTTACGTTGGCACGTGCGCGTACATGAGTCCCGAACGGTTCGACCCGGATGCTTATGGTGGGAACTATAACGGTTTTGCTGCGGATATATGGAGTTTGGGTTTGACCCTTTTTGAACTCTTTGTGGGTCACTTCCCTTTCCTTCAGGCGGGTCAGAGACCCGATTGGTCCACCCTTATCTGTGCCGTGTGCTTCGGCGACGCCCCGAGCCTCCCCGAGACTGCGTCGCCGGAGTTTCGCAGCTTCGTCCAGTGTTGCCTCAAGAAGGAGTCCGGTGAGAGGTGGACGGCGGCTCAGCTGTTGACCCACCCGTTTGTGTGCAAAGCCCCGAATCCGTGTTAA 966 0.6097 MALVRHRRHPNLRLPLLESSERRPRFPLPLPPTATKPSAATGCADAISAGDLEKLAVLGHGNGGTVYKVRHKVTSAIYALKVIHSVTDSTTRRRALSESTILSRAADCPHVVRYHGSFEKPSGDVEILMEYVDGGSLETALKKDGTFSEERLAAVARDVLNGLAYLHARKIAHRDIKPANILVNTEGEVKIADFGVSKLLCRTLESCNSYVGTCAYMSPERFDPDAYGGNYNGFAADIWSLGLTLFELFVGHFPFLQAGQRPDWSTLICAVCFGDAPSLPETASPEFRSFVQCCLKKESGERWTAAQLLTHPFVCKAPNPC* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0971 321 ProSitePatterns Protein kinases ATP-binding region signature. 58 81 IPR017441 GO:0005524
Apr6g0971 321 Pfam Protein kinase domain 53 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr6g0971 321 ProSiteProfiles Protein kinase domain profile. 52 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr6g0971 321 SUPERFAMILY Protein kinase-like (PK-like) 50 317 IPR011009 -
Apr6g0971 321 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 3 316 - -
Apr6g0971 321 SMART serkin_6 52 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr6g0971 321 Gene3D Phosphorylase Kinase; domain 1 43 127 - -
Apr6g0971 321 ProSitePatterns Serine/Threonine protein kinases active-site signature. 171 183 IPR008271 GO:0004672|GO:0006468
Apr6g0971 321 Gene3D Transferase(Phosphotransferase) domain 1 128 320 - -
Apr6g0971 321 PANTHER SERINE/THREONINE-PROTEIN KINASE C01C4.3-RELATED 3 316 - -
Apr6g0971 321 CDD PKc_MAPKK_plant_like 51 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0971 Apr-Chr6 14288573 14289774 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0971 1 314 MAP Kinase Kinase Gene Family AT1G73500 59.365 1.85e-124 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Apr6g0971 Pkinase 7.4e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0971 K20604 - gmx:100804100 533.872