Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0968 ATGGTGTTGGGTTGGAGAAGAAGGAAGAACAACAAGCACAGCAAAGGTGGCAAACCCAATGTGGAGTTGGTGGTTCCAAACCACTTCAGGTGTCCAATTTCCCTTGATTTGATGAAGGATCCTGTGACATTGTCAACTGGGATCACATATGATAGAGAGAGTGTTGAAAGGTGGTTTGATGAAGGGAACTTCACTTGTCCTGTTACAAACCAAGTTGTGAGGAATTTTGACATGATTCCTAATCATTCTCTTAGGATAATGATTCAAGATTGGTGTGTGGAAAATAGGCAACATGGGGTTGAGAGGATTCCAACTCCAAGGATACCAATTAGTCCAATTGAGGTTGCTGAGCTTATTCTTCAAGTGAAGGATTCAGCAAAGGGTTTGGACCAATATGGATGCCTGGAATTGGTGCAGAAAATGAAGAGATGGGGTGGTGAGAGTGAGAGGAATAAGAGGTGCATAGTTGACAATGGAGCACCTGGGGCATTGGCTTCAGCTTTTGATGTATTTGCAAATGATTCTGTTGAGAGGAATGTGGTTGTTCTTGAGGAGATTTTGTCTGCACTCAATTGGATGTTTCCACTTCAATTGGAAGCTCAGAAATCCTTGGGATCTTTGGCTTCTTTACGTTGCATGGTTTGGTTCTTGAAGCACCAAGATCTTTCGGGGAAAGAAAAGTCCATTGTGGCATTGAAGGAGCTTCTTTCCTTTGGTGATGAACAACATGTGAAGGCTTTGTTAGAAATTGAAGGGGTCTATGAGCTCTTGGTGGAGTTCATCAACAAGAGGATTAGTCCAACTATCACAAAGGCTTCATTGAGGGTAGTTTGGTACCTTGTTTCATCCTCTTCTAATTCCAGTGATAAGATGAAATTGTCATTTGTTGAATTGGGTTTGGTTCCTTTTTTGCTTGACATTCTCATTGACTCAGAAAAGAGCCTTTGTGAGAAGGCTTTGGCTATTTTGGACTCACTTTGTAGCTGTGAAGAAGGGAGGGAGAAAGCTTATGGTAATGATTTAACAATTCCTTTGTTGGTGAAGAAGATATTGAGAGTTTCAGCATTGACCACAGATTATTCTGTTTCTGCTATCTGGAAACTTTGCAAGTTTGGAGAGAAAGGTGAAGGAAGAGCTCTTGTTGAGGCTCTTCAAGTTGGTGCTTTTCAGAAGCTCTTGTTGGTGTTGCAAGTTGGTTGTGGTGATGAGACCAAGGACAAAGCAACTGAACTTCTCAAATTGCTGAATCCTTACAGGGCCGAATTGGAATGCATAGATTCAGATTTCAAGAACCTCAAGAGGTCCTTCTAA 1311 0.4165 MVLGWRRRKNNKHSKGGKPNVELVVPNHFRCPISLDLMKDPVTLSTGITYDRESVERWFDEGNFTCPVTNQVVRNFDMIPNHSLRIMIQDWCVENRQHGVERIPTPRIPISPIEVAELILQVKDSAKGLDQYGCLELVQKMKRWGGESERNKRCIVDNGAPGALASAFDVFANDSVERNVVVLEEILSALNWMFPLQLEAQKSLGSLASLRCMVWFLKHQDLSGKEKSIVALKELLSFGDEQHVKALLEIEGVYELLVEFINKRISPTITKASLRVVWYLVSSSSNSSDKMKLSFVELGLVPFLLDILIDSEKSLCEKALAILDSLCSCEEGREKAYGNDLTIPLLVKKILRVSALTTDYSVSAIWKLCKFGEKGEGRALVEALQVGAFQKLLLVLQVGCGDETKDKATELLKLLNPYRAELECIDSDFKNLKRSF* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0968 436 CDD RING-Ubox_PUB 29 71 IPR045210 -
Apr6g0968 436 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 103 IPR013083 -
Apr6g0968 436 SUPERFAMILY ARM repeat 147 409 IPR016024 -
Apr6g0968 436 Gene3D - 114 416 IPR011989 -
Apr6g0968 436 ProSiteProfiles U-box domain profile. 24 98 IPR003613 GO:0004842|GO:0016567
Apr6g0968 436 SUPERFAMILY RING/U-box 22 101 - -
Apr6g0968 436 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 11 436 - -
Apr6g0968 436 SMART Ubox_2 28 91 IPR003613 GO:0004842|GO:0016567
Apr6g0968 436 PANTHER WDSAM1 PROTEIN 11 436 IPR045185 GO:0061630
Apr6g0968 436 Pfam U-box domain 25 96 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0968 Apr-Chr6 14267253 14269238 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0968 5 436 U-box Gene Family AT5G37490 44.444 1.53e-119 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0968 - - gmx:100794340 760.755