Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0962 ATGCCCCAGAATAAGATTTTTCATGCCCCATCAACGAATCCGATTCCTGATCTTTCCCTGCACATTAGCCTCCCAAATAGTGCTCCTTCTTCAATTTGCACTGATGGAGATTCACCCTTTGATGTATGGACACAAGCAGATACTGATGGCCTCAAATCTCATAGTGATGGTTCAATCAAGGGTTGCCCTCACACCGACACAGAACTGTCCTTAGCCAACACCACAAGTACTGCTACTCATGAGGTTGAAAGCACATGGAGGAGGAGAAACTTTGTTAGAATCAATAATCATGGGTTTTCTGAGGGTGAAAACACAAGGCTCATAAATGGAATCCCTCTCTACAGTAACTTTTCTTCTTTGGAGAACAATATAGAGAGGGACCCTTCTAAGTTTTCTTCTCTCTATGCAGTTCCATACCCTTCTTGTGTCGCTAATTCAGCTCCTAATTATGATAATAATGGTATTATTGGGGGTGCAGCAGTAGAACCAATCTCAAGGTTTAATGGGATAACCATGGAGAGTCTAAGACCTCAACAGTTTCGGTACTTTGATTTTCCTCATCACCAATATCATCAGCATCAACAGCATCATCAGTTTGGGAATAATAACATTGGAGCTTCTGATTTTTCAAATGGATTTTTGAGGTCAAGAATGCTGTCGAGGCAACAAAGTAAGAGAAACATGAGGGCTCCAAGAATGCGTTGGACTAGTTCTCTTCACAATCGCTTTGTTCATGCTGTTGCGTTGCTTGGTGGCCATGAAAGGGCTACTCCTAAGTCGGTTTTGGAACTCATGGATGTCAAAGATCTAACATTAGCTCATGTCAAGAGCCATTTGCAGATGTATCGGACTGTTAAGAACACTGACAAGCCTGCAGCTTCTTCAGATGGGGATGGGGATGAGGATTTCATGTCCCTAACACTACCCCTTAATCAAAATAAGAACTTTTTACCAAATCAGAGAGGACCTCCAAATGCATCTATAGATCATGATATTGGCTATACTTCAAGCAATCTATGGGCTAATTCTTCTTCCAGTAGAGGAGCACGAATACAAGCAAATTCCCGAGATTTGGAAGAGCTTAATCATCAAGATATTGTATCATCTCAGCATGTTGGGAAGCTGTCAGAGGGAAGCAACTATACACAAACAAGAAGCTTCAAGGATCAAAATTTGGAGTGTCAGAATCCAAGCTTGGAGATCACCTTAGGAAGATCAAATTGGCACAACGATGAACATGCCTAA 1245 0.4169 MPQNKIFHAPSTNPIPDLSLHISLPNSAPSSICTDGDSPFDVWTQADTDGLKSHSDGSIKGCPHTDTELSLANTTSTATHEVESTWRRRNFVRINNHGFSEGENTRLINGIPLYSNFSSLENNIERDPSKFSSLYAVPYPSCVANSAPNYDNNGIIGGAAVEPISRFNGITMESLRPQQFRYFDFPHHQYHQHQQHHQFGNNNIGASDFSNGFLRSRMLSRQQSKRNMRAPRMRWTSSLHNRFVHAVALLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKNTDKPAASSDGDGDEDFMSLTLPLNQNKNFLPNQRGPPNASIDHDIGYTSSNLWANSSSSRGARIQANSRDLEELNHQDIVSSQHVGKLSEGSNYTQTRSFKDQNLECQNPSLEITLGRSNWHNDEHA* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0962 414 Pfam Myb-like DNA-binding domain 232 283 IPR001005 -
Apr6g0962 414 SUPERFAMILY Homeodomain-like 228 285 IPR009057 -
Apr6g0962 414 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 1 414 IPR044847 GO:0000976|GO:0006355|GO:0010158
Apr6g0962 414 Gene3D - 230 287 - -
Apr6g0962 414 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 1 414 - -
Apr6g0962 414 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 231 284 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0962 Apr-Chr6 14201161 14211157 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0962 212 409 G2-like Transcription Factor Family AT5G16560 51.675 3.12e-52 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Apr6g0962 Myb_DNA-binding 1.6e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0962 - - gmx:100796973 565.074