Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0956 ATGGAGAACTCATCATCATCATCATCATCATCAAACTGCGTCTATAGAGAGTGCTTGAGAAACCATGCAGCCAGTCTCGGCAGCTACGCTACCGACGGCTGCGGCGAGTTCACCCTCGACCTCGACGCCTCGTCCCCCGCCGCTAGTCTCCAGTGTGCTGCCTGCGGCTGTCACCGCAACTTTCACCGGAAGGTGACGTGTCCGCCGGCGGAAGTCTTGACTGCCGCAGGCAGCGGTGACATGATGGAATACTCTGGCGGCGGCGAGGGAAGGATAGAGGTTGGAGAGAGGAGTAATAGTAATAACAAGAAGAGGTTTAGGACAAAATTCAGTTTGGAACAAAAGGAGAAGATGTTGGGATTTGCTGAGAAGTTGGGGTGGAAGCTGCAGAGAAAAGAGGTTGATGATGAGATTGAGAGGTTCTGTAGAAGTGTTGGGGTTAGTAGACAGGTTTTCAAGGTTTGGATGCATAACCATAAGAACTCTAATAATTCTTCTGCCAATGCATCCTCTCTCACTCAGTAA 525 0.5048 MENSSSSSSSSNCVYRECLRNHAASLGSYATDGCGEFTLDLDASSPAASLQCAACGCHRNFHRKVTCPPAEVLTAAGSGDMMEYSGGGEGRIEVGERSNSNNKKRFRTKFSLEQKEKMLGFAEKLGWKLQRKEVDDEIERFCRSVGVSRQVFKVWMHNHKNSNNSSANASSLTQ* 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0956 174 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 10 165 - -
Apr6g0956 174 Pfam ZF-HD protein dimerisation region 13 66 IPR006456 -
Apr6g0956 174 SUPERFAMILY Homeodomain-like 95 161 IPR009057 -
Apr6g0956 174 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 103 161 IPR006455 -
Apr6g0956 174 Gene3D - 90 167 - -
Apr6g0956 174 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 15 64 IPR006456 -
Apr6g0956 174 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 11 10 165 - -
Apr6g0956 174 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 15 65 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0956 Apr-Chr6 14146891 14147514 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0956 15 162 ZF-HD Transcription Factor Family AT4G24660 43.195 6.67e-41 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Apr6g0956 ZF-HD_dimer 4.6e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0956 - - vun:114182488 253.447
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1608 2 21817725 21818231 Apr6g0956 6 14146891 14147514 PCT