Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0954 ATGTTAGCCAATAACTTATCTCCATCTTCAGTTCCCACTTCTGAGCCTTTTCCCTGCGCTGAAAATGGCACTGCCACCAATAAAAGGAAGAGAAGGCCTGCTGGAACACCAGATCCAGATGCAGAGGTGGTGTCTCTCTCTCCAAAGACTTTGTTGGAATCAGATCGTTATGTGTGTGAGATCTGCAACCAGGGGTTTCAGAGGGACCAAAACCTTCAGATGCATAGGAGGAGGCACAAGGTGCCATGGAAGCTATTGAAGAGGGAAACACCAGTGGTGAGAAAGAGAGTGTTTGTGTGTCCTGAACCTACTTGCTTGCACCATGATCCATGTCATGCTTTGGGTGATCTTGTTGGGATAAAGAAGCATTTCAGGAGGAAACATAGCAATCATAAACAATGGGTTTGTGAGAGATGCTCCAAAGGCTATGCAGTGCAGTCTGATTACAAAGCACATCTCAAAACATGTGGCACCCGAGGCCACTCATGTGATTGTGGACGAGTTTTCTCAAGGGTTGAGAGTTTCATTGAGCACCAAGATGCTTGCAACATGGGAAGGCTCAGGCCTGAAACTCAACCTCTACAACCAGCTGCATGCTTGTCAAGAACAGCTTCAAGTCCAAGTCCTTCAAGTGAAACCAATTTCAGCACAGCTCCATGGCCAACAAGAATGATAATACCAAAGCCAACGACAGATCAACACCCTACAATCTTCATGAATAACCCTACTCCTCTCACCACTGCTGAAACCTCATCCAAGAACAACAAACTCCACCCAAACTTGGAGCTTCAACTCTCCACCACCAACAACAACAACAACCCCAACACCACCAACACATCAAACTCAAACCCTATTGAGGCTGCAATATCCACATCACTATCACCTAAGAGAGATCATCATGAGAACCATTCAACCCATTTGCAACTCTCAATCGGGTCATCGGATATGAGTGAGAAAAATGAATCAAACAGGAACTCATCAGAAAAAAGCAGCAACAGCAATGGTGAGAAGCAATCCATGGCTTTGTTGAGGGTTCAAGAGCAAGCAAGGGAACACTTGAGGATAGCCATGGCAGAGAAAGCATATGCGGAGGAAGCAAGGAAACAAGCAAAGAGACAGATTGAACTTGCGGAGCAAGAGTTCACAAACGCTAAGAGGATAAGACAACAAGCACAATCGGAACTTGACAAAGCCTACGCCTTGAAAGAACATGCAATGAAGCAAATCAACTCCACCATGCTCCAAATCACTTGCCACGCTTGCAAACAACACTTCCAAGCTCGAAATGCAACCCCGGACGAGAATTCTTTGGTGTTGAGCTACGTGTCTTCTGCTATAACCACTGAAGGAGGAGAAGTAGAAAACGATAATGGAAAAGATCATGGCAAAAACAACAACTAA 1401 0.4525 MLANNLSPSSVPTSEPFPCAENGTATNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCERCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGRLRPETQPLQPAACLSRTASSPSPSSETNFSTAPWPTRMIIPKPTTDQHPTIFMNNPTPLTTAETSSKNNKLHPNLELQLSTTNNNNNPNTTNTSNSNPIEAAISTSLSPKRDHHENHSTHLQLSIGSSDMSEKNESNRNSSEKSSNSNGEKQSMALLRVQEQAREHLRIAMAEKAYAEEARKQAKRQIELAEQEFTNAKRIRQQAQSELDKAYALKEHAMKQINSTMLQITCHACKQHFQARNATPDENSLVLSYVSSAITTEGGEVENDNGKDHGKNNN* 467
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0954 466 Pfam Zinc finger, C2H2 type 57 79 IPR013087 -
Apr6g0954 466 Gene3D Classic Zinc Finger 119 194 - -
Apr6g0954 466 MobiDBLite consensus disorder prediction 197 220 - -
Apr6g0954 466 Gene3D Classic Zinc Finger 35 97 - -
Apr6g0954 466 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Apr6g0954 466 PANTHER OS03G0310200 PROTEIN 1 450 IPR039288 GO:0009630
Apr6g0954 466 MobiDBLite consensus disorder prediction 197 338 - -
Apr6g0954 466 SUPERFAMILY beta-beta-alpha zinc fingers 54 80 IPR036236 -
Apr6g0954 466 MobiDBLite consensus disorder prediction 233 290 - -
Apr6g0954 466 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Apr6g0954 466 PANTHER PROTEIN INDETERMINATE-DOMAIN 16-LIKE 1 450 - -
Apr6g0954 466 MobiDBLite consensus disorder prediction 1 21 - -
Apr6g0954 466 Coils Coil 353 408 - -
Apr6g0954 466 MobiDBLite consensus disorder prediction 1 44 - -
Apr6g0954 466 MobiDBLite consensus disorder prediction 306 338 - -
Apr6g0954 466 SMART c2h2final6 57 79 IPR013087 -
Apr6g0954 466 SMART c2h2final6 98 128 IPR013087 -
Apr6g0954 466 SMART c2h2final6 134 161 IPR013087 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Apr6g0954 Apr-Chr6 14112596 14116174 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0954 21 455 C2H2 Transcription Factor Family AT2G01940 54.585 3.54e-152 438
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr6g0954 zf-C2H2 0.0044 CL0361
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0954 K25871 - gmx:100800187 770.385
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1609 2 21828599 21831663 Apr6g0954 6 14112596 14116174 PCT