Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Apr6g0954 | ATGTTAGCCAATAACTTATCTCCATCTTCAGTTCCCACTTCTGAGCCTTTTCCCTGCGCTGAAAATGGCACTGCCACCAATAAAAGGAAGAGAAGGCCTGCTGGAACACCAGATCCAGATGCAGAGGTGGTGTCTCTCTCTCCAAAGACTTTGTTGGAATCAGATCGTTATGTGTGTGAGATCTGCAACCAGGGGTTTCAGAGGGACCAAAACCTTCAGATGCATAGGAGGAGGCACAAGGTGCCATGGAAGCTATTGAAGAGGGAAACACCAGTGGTGAGAAAGAGAGTGTTTGTGTGTCCTGAACCTACTTGCTTGCACCATGATCCATGTCATGCTTTGGGTGATCTTGTTGGGATAAAGAAGCATTTCAGGAGGAAACATAGCAATCATAAACAATGGGTTTGTGAGAGATGCTCCAAAGGCTATGCAGTGCAGTCTGATTACAAAGCACATCTCAAAACATGTGGCACCCGAGGCCACTCATGTGATTGTGGACGAGTTTTCTCAAGGGTTGAGAGTTTCATTGAGCACCAAGATGCTTGCAACATGGGAAGGCTCAGGCCTGAAACTCAACCTCTACAACCAGCTGCATGCTTGTCAAGAACAGCTTCAAGTCCAAGTCCTTCAAGTGAAACCAATTTCAGCACAGCTCCATGGCCAACAAGAATGATAATACCAAAGCCAACGACAGATCAACACCCTACAATCTTCATGAATAACCCTACTCCTCTCACCACTGCTGAAACCTCATCCAAGAACAACAAACTCCACCCAAACTTGGAGCTTCAACTCTCCACCACCAACAACAACAACAACCCCAACACCACCAACACATCAAACTCAAACCCTATTGAGGCTGCAATATCCACATCACTATCACCTAAGAGAGATCATCATGAGAACCATTCAACCCATTTGCAACTCTCAATCGGGTCATCGGATATGAGTGAGAAAAATGAATCAAACAGGAACTCATCAGAAAAAAGCAGCAACAGCAATGGTGAGAAGCAATCCATGGCTTTGTTGAGGGTTCAAGAGCAAGCAAGGGAACACTTGAGGATAGCCATGGCAGAGAAAGCATATGCGGAGGAAGCAAGGAAACAAGCAAAGAGACAGATTGAACTTGCGGAGCAAGAGTTCACAAACGCTAAGAGGATAAGACAACAAGCACAATCGGAACTTGACAAAGCCTACGCCTTGAAAGAACATGCAATGAAGCAAATCAACTCCACCATGCTCCAAATCACTTGCCACGCTTGCAAACAACACTTCCAAGCTCGAAATGCAACCCCGGACGAGAATTCTTTGGTGTTGAGCTACGTGTCTTCTGCTATAACCACTGAAGGAGGAGAAGTAGAAAACGATAATGGAAAAGATCATGGCAAAAACAACAACTAA | 1401 | 0.4525 | MLANNLSPSSVPTSEPFPCAENGTATNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCERCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGRLRPETQPLQPAACLSRTASSPSPSSETNFSTAPWPTRMIIPKPTTDQHPTIFMNNPTPLTTAETSSKNNKLHPNLELQLSTTNNNNNPNTTNTSNSNPIEAAISTSLSPKRDHHENHSTHLQLSIGSSDMSEKNESNRNSSEKSSNSNGEKQSMALLRVQEQAREHLRIAMAEKAYAEEARKQAKRQIELAEQEFTNAKRIRQQAQSELDKAYALKEHAMKQINSTMLQITCHACKQHFQARNATPDENSLVLSYVSSAITTEGGEVENDNGKDHGKNNN* | 467 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Apr6g0954 | 466 | Pfam | Zinc finger, C2H2 type | 57 | 79 | IPR013087 | - | |
Apr6g0954 | 466 | Gene3D | Classic Zinc Finger | 119 | 194 | - | - | |
Apr6g0954 | 466 | MobiDBLite | consensus disorder prediction | 197 | 220 | - | - | |
Apr6g0954 | 466 | Gene3D | Classic Zinc Finger | 35 | 97 | - | - | |
Apr6g0954 | 466 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 59 | 79 | IPR013087 | - | |
Apr6g0954 | 466 | PANTHER | OS03G0310200 PROTEIN | 1 | 450 | IPR039288 | GO:0009630 | |
Apr6g0954 | 466 | MobiDBLite | consensus disorder prediction | 197 | 338 | - | - | |
Apr6g0954 | 466 | SUPERFAMILY | beta-beta-alpha zinc fingers | 54 | 80 | IPR036236 | - | |
Apr6g0954 | 466 | MobiDBLite | consensus disorder prediction | 233 | 290 | - | - | |
Apr6g0954 | 466 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 57 | 79 | IPR013087 | - | |
Apr6g0954 | 466 | PANTHER | PROTEIN INDETERMINATE-DOMAIN 16-LIKE | 1 | 450 | - | - | |
Apr6g0954 | 466 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Apr6g0954 | 466 | Coils | Coil | 353 | 408 | - | - | |
Apr6g0954 | 466 | MobiDBLite | consensus disorder prediction | 1 | 44 | - | - | |
Apr6g0954 | 466 | MobiDBLite | consensus disorder prediction | 306 | 338 | - | - | |
Apr6g0954 | 466 | SMART | c2h2final6 | 57 | 79 | IPR013087 | - | |
Apr6g0954 | 466 | SMART | c2h2final6 | 98 | 128 | IPR013087 | - | |
Apr6g0954 | 466 | SMART | c2h2final6 | 134 | 161 | IPR013087 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Apr6g0954 | Apr-Chr6 | 14112596 | 14116174 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Apr6g0954 | 21 | 455 | C2H2 Transcription Factor Family | AT2G01940 | 54.585 | 3.54e-152 | 438 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Apr6g0954 | zf-C2H2 | 0.0044 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Apr6g0954 | K25871 | - | gmx:100800187 | 770.385 |