Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0944 ATGTGCAGTAGAGGCCATTGGAGGCCAGCTGAGGATGAGAAGCTTCGAGAGTTGGTGGAACGCTTTGGACCTCATAATTGGAATGCCATAGCTGAGAAGCTCCGAGGAAGATCAGGGAAAAGTTGTAGGTTGAGATGGTTCAATCAATTGGACCCAAGAATAAACAGAAGTCCTTTCACAGAGGAAGAAGAAGAGCGTCTTCTAGCTTCTCACAGGATTCATGGTAATAGATGGGCTGTAATTGCAAGACACTTCCCTGGAAGGACTGATAATGCTGTTAAAAATCATTGGCATGTGATGATGGCAAGGATTAGAAGAGAAAGGTCTAAAATTTACAATGTAAAACAGCCTCTTTTTTCTCCCAACCTTGAGACTAATTTTGAGACTATTCCTTCTTTTGTTGAGAAGTATTATGAAAAGTACAACCACCCTTGTGTCACAAGTAGCCCCTTCCAATTTCCTAAGAAGTTTTACTTTCAAGATCCAAGTTCCACAATGCCTCAAGACAAGAGTCAATCGGTGGAGTTTTATGATTTTCTTCAAGTAAATACCGATTCCAATAAAAGTGAAGTGACAGACAATGCCAAAAGAGATGATGAGGAAGTGAATCAAGATAATGAGGGACAACAGAACAAGGACAATGGTGTTCCATTCATTGATTTTTTGTCTACTGGAAGCTGCTAA 684 0.4035 MCSRGHWRPAEDEKLRELVERFGPHNWNAIAEKLRGRSGKSCRLRWFNQLDPRINRSPFTEEEEERLLASHRIHGNRWAVIARHFPGRTDNAVKNHWHVMMARIRRERSKIYNVKQPLFSPNLETNFETIPSFVEKYYEKYNHPCVTSSPFQFPKKFYFQDPSSTMPQDKSQSVEFYDFLQVNTDSNKSEVTDNAKRDDEEVNQDNEGQQNKDNGVPFIDFLSTGSC* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0944 227 Pfam Myb-like DNA-binding domain 7 67 - -
Apr6g0944 227 Gene3D - 57 116 - -
Apr6g0944 227 SMART sant 55 103 IPR001005 -
Apr6g0944 227 SMART sant 3 52 IPR001005 -
Apr6g0944 227 MobiDBLite consensus disorder prediction 185 215 - -
Apr6g0944 227 ProSiteProfiles Myb-like domain profile. 1 50 IPR001005 -
Apr6g0944 227 PANTHER MYB PROTEIN-RELATED 1 226 - -
Apr6g0944 227 CDD SANT 7 48 IPR001005 -
Apr6g0944 227 CDD SANT 58 101 IPR001005 -
Apr6g0944 227 Gene3D - 4 55 - -
Apr6g0944 227 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 50 IPR017930 -
Apr6g0944 227 PANTHER MYB-RELATED PROTEIN A-LIKE 1 226 - -
Apr6g0944 227 MobiDBLite consensus disorder prediction 190 207 - -
Apr6g0944 227 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 51 105 IPR017930 -
Apr6g0944 227 ProSiteProfiles Myb-like domain profile. 51 101 IPR001005 -
Apr6g0944 227 SUPERFAMILY Homeodomain-like 4 97 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0944 Apr-Chr6 14018011 14019934 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0944 1 226 MYB Transcription Factor Family AT1G17950 58.300 2.47e-86 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr6g0944 Myb_DNA-bind_6 3.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0944 K09422 - gmx:100811746 418.698