Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0936 ATGGATGGTTTTGAGAAAGAGGAGGTGCTGCTCTTAGATACTCATTTCAAACCATTCAATGAACCTGTTGATTCTAAGTTCCAGAGGCATGTATCCGGGACAAAAAATGCATCGGTTTCTATTCCCATGACATCGTTGGAGCCAAATGAAAGAGCTACTAATATTATGGGCCACACTGGTCCCCTAAGGAGTCAGAGAAAAACTCCATCTAATCAGATGAGTCGTCCATTGAATGTTTCGCATAGACCTGGAAACCATTTCTGGGCACCAGAGAACCAAACAGCAGAAAGTAGGACAGAAGTTTTTTCATGCAGTGGCATGAATGAAAATGATATGCAGAAGAACTATGATGGCAAGAATGAACATTTAGTTAGGTCTGGTCAACTGGGAATGTGTAACGATCCGTATTGTACAATTTGCCCAACTTACATCAAGCCTACTCAACAAAGCAATTCAAAAGCTTCGGGTATATTCAATACTAAGTTTCACAATGCCACTAAGGGGGATGCCAAGGATTGGGCAAGAACTACTAGAGTTGTGAATCCTCATACTAAACTTGTAAAACAATGGAATAAAATCCTTGCAATTTGTTGCTTAGTAGCAATTTTTGTGGATCCATTATTTTTCTTCTTGCTCTCTGTGCACAAGGAAAATAAATGTATTGTCATAAACTCGACTATGACAACAATGCTTGTTGTACTTAGAAGCATAAATGATTCCATACACTTCCTAAACATTATTCTTCAGTTTAGGTTGGCTTATGTGGCTCCCGAGTCTCTGGTGGTTGGTGCAGGGGAGTTAGTCGATGATCCTAAAAAAATAGCTTTTCACTACCTACAAACATCTTTTATTGTTGACTTATTTGTTGTACTTCCACTTCCTCAGAGGGTCAATCAATGTTTACGAGATGCTTGCAGCAAAACATACTTTGATGAATGCGCAAAATTCATTGATTGTGGGCATGGACCAACTGAAGAATATCATAATTACACAAAAAATGTGTCTAACTGGAGGAACAGTTCTGATGCAAGTGCTTGTTTTACTGAGGATGGTTTTAAGTATGGGATCTATCTGAAAGCTGTCAACCTTACTACAGATCATAATGTTTTCACCAGATATGTATATTCATCATTCTGGGGATTCCAGCAAATTAGTACTCTGGCTGGCAATTTAAGCCCCAGCTATTTTGTTTGGGAAGTTGTTTTTACCATGGTCATAATAGGATCAGGGCTTTTGCTGTTTGCTCTTCTCATTGGAAACATACAGAACTTTCTTCAGGCTCTTGGACGCAGGAGTCTAGAAATGTCACTTAGACAACGCGATGTTGAGCAATGGATGAGCCATCGACGCTTACCAGAAGATCTGAGAAGGAGAGTGAGACAAGCTGAACGTTATAACTGGGCTGCAACAAGAGGGGTGAATGAAGGAATGCTCTTGGAGAATTTGCCAGAAGACCTCCAGAGGGACATTAGACGTCATCGCTTTACATTTGTTAAGAAAGTTCAAATTTTCGCCTTGTTGGATGAGCGTATCTTGGATGCCATCTGTGAGAGGCTAAGACAAAAAACATATATCAAAGGAAGCAAAATTTTGTATGCTGGTGGTCTGGTAGAAAAGGTGGTTTTTATTGTGCGCGGACAATTGGAGAGCATTGGCGAAGATGGAATTAGTGCTCCCCTATCTGAAGGGAGTGTTTGTGGGGAAGAACTTCTCACACGGTGCCTTGAGCATCCTTTAGGAAACCAAGGTTGTGGAAAAGAAAGGATTCCAACACAAGGGCTGGTTAGTAACCGATCAGTATGTTGCTTAACAAATGTGGATGCATTTTCCCTTAGAGCAGAAGACCTTGAAGATGTTACAAGACTTTTTGCAAGAATCTTCCGGAAGGAAAGTAGCACCTTACTGGAGACGCTTTGCAGCAACGAGGATCCAGGTTGCAAGGAAATACAGGAAGAAACGTCTTAG 1965 0.4076 MDGFEKEEVLLLDTHFKPFNEPVDSKFQRHVSGTKNASVSIPMTSLEPNERATNIMGHTGPLRSQRKTPSNQMSRPLNVSHRPGNHFWAPENQTAESRTEVFSCSGMNENDMQKNYDGKNEHLVRSGQLGMCNDPYCTICPTYIKPTQQSNSKASGIFNTKFHNATKGDAKDWARTTRVVNPHTKLVKQWNKILAICCLVAIFVDPLFFFLLSVHKENKCIVINSTMTTMLVVLRSINDSIHFLNIILQFRLAYVAPESLVVGAGELVDDPKKIAFHYLQTSFIVDLFVVLPLPQRVNQCLRDACSKTYFDECAKFIDCGHGPTEEYHNYTKNVSNWRNSSDASACFTEDGFKYGIYLKAVNLTTDHNVFTRYVYSSFWGFQQISTLAGNLSPSYFVWEVVFTMVIIGSGLLLFALLIGNIQNFLQALGRRSLEMSLRQRDVEQWMSHRRLPEDLRRRVRQAERYNWAATRGVNEGMLLENLPEDLQRDIRRHRFTFVKKVQIFALLDERILDAICERLRQKTYIKGSKILYAGGLVEKVVFIVRGQLESIGEDGISAPLSEGSVCGEELLTRCLEHPLGNQGCGKERIPTQGLVSNRSVCCLTNVDAFSLRAEDLEDVTRLFARIFRKESSTLLETLCSNEDPGCKEIQEETS* 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0936 654 MobiDBLite consensus disorder prediction 52 83 - -
Apr6g0936 654 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 27 295 - -
Apr6g0936 654 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 295 630 - -
Apr6g0936 654 CDD CAP_ED 503 619 IPR000595 -
Apr6g0936 654 SMART cnmp_10 503 638 IPR000595 -
Apr6g0936 654 MobiDBLite consensus disorder prediction 52 79 - -
Apr6g0936 654 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 20, CHLOROPLASTIC-RELATED 295 630 - -
Apr6g0936 654 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 20, CHLOROPLASTIC-RELATED 27 295 - -
Apr6g0936 654 SUPERFAMILY Voltage-gated potassium channels 182 426 - -
Apr6g0936 654 Gene3D Helix hairpin bin 433 493 - -
Apr6g0936 654 Gene3D Jelly Rolls 501 625 IPR014710 -
Apr6g0936 654 ProSiteProfiles cAMP/cGMP binding motif profile. 503 578 IPR000595 -
Apr6g0936 654 SUPERFAMILY cAMP-binding domain-like 432 629 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0936 Apr-Chr6 13946035 13964040 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0936 295 583 Ion Channels AT3G17700 68.858 2.02e-123 380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0936 K05391 - oeu:111402769 661.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0936 6 13946035 13964040 Apr6g0936 6 13946035 13964040 ECH