Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0935 ATGGCAAATTTTGAAGACAATGAACCATGGATGCTGCGAAAAACACATGCACAATCATATGGTGAACCATTAGATTCTAAATTCCAAAGTCCTTTGTCTAGGACTCAAAGTGCTGAATTTTCCATTTCCATGGAACCATATGAGAGAGAAACTAGTATTATGGGACATACTGGTCCACTTTGGAGTGAGAGGAAAACTCCCTTCAGGCAGATAAGGGCTCCACTATATGCTACCACTGAAACTGGAAATCTTTTGCAGCAGAGTATAGTTGTAACAGGAAATGAAGAGGTGGAAAGAAAGGTGGAAGAATTTTCTACTTTCAACAGCATGGGTTCAAATTACTGGAACAACAACTATGAAAATAAAAATGAACACTTAATGAGGTCAGGGCGATTGGGAATGTGTAATGATCCTTATTGTACTATTTGCCCTACTTACTTCAATGCTTCTCAGTCAAGAAATTCAAAATCTTCAAATATATTTGAGTCCAAAACTAAGTTCCGTAATTCTCTTTATGGGGATGCCAAAGGTTTTGCAAGAAAACTTTTTTCTTTCTGCTCCTCATATGCTCCTAGAGTTATGAACCCTCACACAAAATTTGTACAACAATGGAACAAGATTTTGGCCATTTGTTGCTTGGTGGCAATTTTTCTGGATCCTTTATTTTTCTTCGTATTGTATGTGCAGCAGGATTATAATTGTATTGTTATCAACTGGAGATTGACAATAGCACTTGCTATACTTAGAACAATGAATGATTTTGTATATCTCTTTAACATCCTTCTCCAGTTTAAATTAGCTTATGTCTCCCCTGAATCCATGGTGGTTGGTGCTGGAGATTTAGTTGACCATCCCAAAAAAATTGCTCTTCATTACTTAAAGGGTTATTTTCTTTTTGACTTCTTTATCATACTTCCTCTTCCTCAGATAATTATATTAGTTGTCCTACCAAATTCCATGGAGGGAGCAAATTATGTTAAAGATCTTCTGCGTGCAGTGATCCTAGTGCAGTATATTCCCAGATTATTCAGGTTTCTTCCTCTGCTAATTGGCCAGTCTCCAACAGGCTTCATATTTGAGTCAGCCTGGGCAAATTTCACTTTAAATCTTCTCATTTTTATGCTATTTGGCCATGTTGTTGGCTCTTGCTGGTACCTGTTTGGTCTACAGAGGGTTAATCAGTGTTTAAGAGATGCATGTCATAATTCTAATATACCTGGATGCCTGAAACTTGTTGATTGTGGACTTGGCCATAAGGAACACAATCAGATTGACCAAGCATCAGCTCAGTGGAACAACAATACAGATGCCTACAATTGTTTGAATCCCCCTCCCCAGGGTGGTTTTCAGTATGGGATGTATGCCCCTGCTGTCCAACTTATAATAGAAACTAATGTGGTTAACAAATATGTGTTTTCTCTGTTTTGGGGATTCCAGCAAATCAGTGTTTTTGCTGGTAATCAAGTCCCTAGCTATTTTGTATGGGAAGTCCTTTTTGGTATTGCCATAATAGGATTGGGACTCTTGCTTTTTTCGCTTCTCATTGGAAACTTCCAAAATTTTCTTCAATCTCTTGGAAGGAGGAGGCTTGAAATGCAACTTAGACGCCAGGATGTTGAGCAATGGATGAGCCATCGACGATTACCAGGTGATCTAAGAAGGAGAGTACGAGAGGCTGAACGGTTTAATTGGGCTGCAACAAGAGGGGTGAATGAAGAAATGCTAATGGAGGATTTGCCAGAAGATCTCCAGAGGGACATAAGGCGTCATCAATTCAACTTTGTTAAGAAAGTTCGAATTTTTGCACTGATGGATGAGCCTATCTTAGATGCCATTTGTGAGAGACTAAGACAAAAGACATACATCAAAGGAAGTAGAATTTTGCGTCAAGGTGGGTTAGTGGAGAGCATGTTCTTTGTGGTGCGAGGGAAATTGGAAAGCATTGGAGCAGATGGAACTAGAGTTCCCTTATCAGAGGGAGATGCTTGTGGTGAAGAACTTCTGACATGGTATCTAGAGCACTCTTCATTCAGCTCAGATGGTAGAAAAGTAAGGCTTCCAGGACAGAGATTGCTTAGCAGTAGGACAGTAAGCTGCTTAACAAATGTTGAGGCATTTTCCCTCCATGCTGCAGATCTTGAAGAAGTTACAATCCTTTTCACAAGATTCTTGCGGAGTCCACGTGTTCAAGGAGCCTTAAGGTATGAATCACCTTATTGGAGATCCCTTGCAGCAACCCGCATTCAGGTTGCATGGAGATACAAGAAGAAATGTCTAAGTCGTGTTAATTCGTTATTTTCAGATTAA 2307 0.3953 MANFEDNEPWMLRKTHAQSYGEPLDSKFQSPLSRTQSAEFSISMEPYERETSIMGHTGPLWSERKTPFRQIRAPLYATTETGNLLQQSIVVTGNEEVERKVEEFSTFNSMGSNYWNNNYENKNEHLMRSGRLGMCNDPYCTICPTYFNASQSRNSKSSNIFESKTKFRNSLYGDAKGFARKLFSFCSSYAPRVMNPHTKFVQQWNKILAICCLVAIFLDPLFFFVLYVQQDYNCIVINWRLTIALAILRTMNDFVYLFNILLQFKLAYVSPESMVVGAGDLVDHPKKIALHYLKGYFLFDFFIILPLPQIIILVVLPNSMEGANYVKDLLRAVILVQYIPRLFRFLPLLIGQSPTGFIFESAWANFTLNLLIFMLFGHVVGSCWYLFGLQRVNQCLRDACHNSNIPGCLKLVDCGLGHKEHNQIDQASAQWNNNTDAYNCLNPPPQGGFQYGMYAPAVQLIIETNVVNKYVFSLFWGFQQISVFAGNQVPSYFVWEVLFGIAIIGLGLLLFSLLIGNFQNFLQSLGRRRLEMQLRRQDVEQWMSHRRLPGDLRRRVREAERFNWAATRGVNEEMLMEDLPEDLQRDIRRHQFNFVKKVRIFALMDEPILDAICERLRQKTYIKGSRILRQGGLVESMFFVVRGKLESIGADGTRVPLSEGDACGEELLTWYLEHSSFSSDGRKVRLPGQRLLSSRTVSCLTNVEAFSLHAADLEEVTILFTRFLRSPRVQGALRYESPYWRSLAATRIQVAWRYKKKCLSRVNSLFSD* 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0935 768 Gene3D Jelly Rolls 598 722 IPR014710 -
Apr6g0935 768 SMART cnmp_10 600 735 IPR000595 -
Apr6g0935 768 CDD CAP_ED 600 716 IPR000595 -
Apr6g0935 768 Gene3D - 205 525 - -
Apr6g0935 768 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 8 765 - -
Apr6g0935 768 SUPERFAMILY cAMP-binding domain-like 528 717 IPR018490 -
Apr6g0935 768 Gene3D Helix hairpin bin 527 590 - -
Apr6g0935 768 ProSiteProfiles cAMP/cGMP binding motif profile. 600 668 IPR000595 -
Apr6g0935 768 PANTHER NUCLEOTIDE GATED CHANNEL PROTEIN, PUTATIVE-RELATED 8 765 - -
Apr6g0935 768 SUPERFAMILY Voltage-gated potassium channels 196 523 - -
Apr6g0935 768 Pfam Ion transport protein 204 528 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0935 Apr-Chr6 13880723 13891609 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0935 33 676 Ion Channels AT3G17700 57.669 0.0 729
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0935 K05391 - gmx:100795427 1130.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0935 6 13880723 13891609 Apr6g0935 6 13880723 13891609 ECH