Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0931 ATGGAGTATGGAAGTGGAGGAAGTGGGTCCCCTGGTGATCACCATCATCACCATGATGGTTCTGATTCTCAGAGAAGGAAGAAGCGTTACCACCGTCACACAGCTAATCAGATTCAAAGGCTTGAATCGATGTTCAAGGAGTGTCCACACCCAGATGAGAAGCAGAGGTTGCAGTTAAGCAGAGAACTAGGCTTGGCGCCTAGACAGATCAAATTTTGGTTTCAGAATAGGAGGACCCAGATGAAGGCACAGCATGAGAGAGCTGATAATTGTGCACTCAGGGCAGAGAATGACAAGATACGTTGTGAGAACATAGCCATAAGGGAGGCCCTGAAAAATGTTATATGCCCTTCTTGTGGTGGACCTCCTATCAATGAGGATTCTTATTTTGATGAGCAAAAATTGAGGTTGGAGAATGCCCAACTCAAAGAGGAGCTTGATAGAGTGTCTAGCATTGCAGCTAAATACATTGGAAGACCAATTTCTCAGCTTCCTCCAGTTCAGCCTATCCATATATCTTCTTTGGACTTGTCAATGGGGAGTTTTGGGAGCCAAGGATTGGGTGGTCCTTCCCTTGATCTTGATCTTCTTCCTGGGAGTTCTTCTTCATCCATGCCAAATGTGCCTCCTTACCAACCTGCTTGTCTTTCAGACATGGATAAGTCCCTTATGTCAGACATTGCTTCAAATGCCATGGAAGAATTGATAAGACTCTTGCAAACAAATGAGCCCTTGTGGATTAAATCAAGTGCTGATGGGAGGGATGTTCTTAATCTTGATACATATGAAAGAATGTTTCCAAAGACTAATAGTCACTTGAAGAACCCCAATGTTCGCATTGAAGCTTCTAGAGATTCAGGAGTTGTAATTATGAACGGCTTAACTTTGGTTGACATGTTTATGGACCCTAACAAGTGGATGGAGCTATTTCCCACTATTGTCACAATGGCAAGAACTATTGAAGTTATATCTTCTGGAATGATGGGTGGTCACAGTGGTTCTTTGCAATTGATGTATGAAGAATTGCAAGTGCTTTCTCCACTTGTTTCTACTAGAGAGTTCTACTTCCTGCGTTACTGTCAACAAATTGAACAAGGCTTGTGGGCAATAGTAGATGTTTCATATGATTTTCCTCAAGATAACCAATTTGCTCCTCAATTTCGATCTCATCGTCTTCCTTCTGGTTGCTTTATCCAAGACATGCCTAATGGGTATTCCAAGGTTACTTGGATTGAACATGTAGAGATTGAAGATAAAAATCCAGTTCATAGACTCTATAGAAATATTATTTACAGCGGCATGGCATTTGGAGCACAAAGATGGCTCACTACACTTCAAAGGATGTGTGAAAGGCTTGCGTGTCTAATGGTGACAGGCAATTCTACCCGTGATCTTGGAGGAGTGATTCCATCTCCCGAGGGTAAGAGGAGCATGATGAAACTTGCACAAAGGATGGTTACCAATTTCTGTACAAGCATTAGTGCATCACCTGGTCATAGATGGACCACACTCTCAGGGTTGAATGAGATTGGAGTCAGAGTCACTGTGCATAAGAGCACAGATCCTGGCCAACCTAATGGTGTGGTGCTAAGTGCAGCCACCACCATTTGGCTCCCAATTCCTCCACAAACTGTGTTCAATTTTTTCAAGGATGAAAGGAAAAGACCTCAGTGGGATGTTCTTTCCAATGGTAATGCTGTTCAAGAGGTTGCTCATATAGCAAATGGTTCACACCCTGGTAACTGCATATCAGTGCTTCGAGCTTTCAACACAAGTCAAAACAACATGCTCATACTCCAAGAGAGTTGTGTGGACTCCTCAGGTTCCCTTGTGGTGTATTGTCCTGTTGATCTACCAGCCATAAACATAGCAATGAGTGGAGAAGACCCTTCATACATTCCTCTACTTCCGTCAGGCTTCACAATTTCACCTGATGGTGGTTCATCTTCAAGTGGCTCACTCATCACAGTAGCATTCCAAATCCTAGTGAGTAGCTTGCCATCTGCCAAGCTCAACATGGAGTCGGTGACCACTGTTAATAGCCTTATCGGCAACACTGTGCAGCAAATAAAAGCTGCCTTGAATTGTCCTAGTTCCTGA 2100 0.4333 MEYGSGGSGSPGDHHHHHDGSDSQRRKKRYHRHTANQIQRLESMFKECPHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMKAQHERADNCALRAENDKIRCENIAIREALKNVICPSCGGPPINEDSYFDEQKLRLENAQLKEELDRVSSIAAKYIGRPISQLPPVQPIHISSLDLSMGSFGSQGLGGPSLDLDLLPGSSSSSMPNVPPYQPACLSDMDKSLMSDIASNAMEELIRLLQTNEPLWIKSSADGRDVLNLDTYERMFPKTNSHLKNPNVRIEASRDSGVVIMNGLTLVDMFMDPNKWMELFPTIVTMARTIEVISSGMMGGHSGSLQLMYEELQVLSPLVSTREFYFLRYCQQIEQGLWAIVDVSYDFPQDNQFAPQFRSHRLPSGCFIQDMPNGYSKVTWIEHVEIEDKNPVHRLYRNIIYSGMAFGAQRWLTTLQRMCERLACLMVTGNSTRDLGGVIPSPEGKRSMMKLAQRMVTNFCTSISASPGHRWTTLSGLNEIGVRVTVHKSTDPGQPNGVVLSAATTIWLPIPPQTVFNFFKDERKRPQWDVLSNGNAVQEVAHIANGSHPGNCISVLRAFNTSQNNMLILQESCVDSSGSLVVYCPVDLPAINIAMSGEDPSYIPLLPSGFTISPDGGSSSSGSLITVAFQILVSSLPSAKLNMESVTTVNSLIGNTVQQIKAALNCPSS* 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0931 699 Gene3D - 13 98 - -
Apr6g0931 699 ProSiteProfiles 'Homeobox' domain profile. 24 84 IPR001356 GO:0003677
Apr6g0931 699 ProSitePatterns 'Homeobox' domain signature. 59 82 IPR017970 GO:0000981|GO:0006355
Apr6g0931 699 Pfam START domain 227 451 IPR002913 GO:0008289
Apr6g0931 699 SMART HOX_1 25 88 IPR001356 GO:0003677
Apr6g0931 699 Pfam Homeodomain 27 82 IPR001356 GO:0003677
Apr6g0931 699 SMART START_1 226 451 IPR002913 GO:0008289
Apr6g0931 699 SUPERFAMILY Bet v1-like 218 452 - -
Apr6g0931 699 Gene3D - 225 452 IPR023393 -
Apr6g0931 699 CDD START_ArGLABRA2_like 221 450 - -
Apr6g0931 699 CDD homeodomain 26 85 IPR001356 GO:0003677
Apr6g0931 699 Coils Coil 132 152 - -
Apr6g0931 699 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ROC8 6 697 - -
Apr6g0931 699 SUPERFAMILY Bet v1-like 472 691 - -
Apr6g0931 699 SUPERFAMILY Homeodomain-like 5 84 IPR009057 -
Apr6g0931 699 MobiDBLite consensus disorder prediction 1 34 - -
Apr6g0931 699 ProSiteProfiles START domain profile. 217 454 IPR002913 GO:0008289
Apr6g0931 699 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 6 697 IPR042160 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0931 Apr-Chr6 13819675 13823296 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0931 22 699 Homeobox Transcription Factor Family AT1G73360 68.526 0.0 960
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Apr6g0931 START 1.2e-48 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0931 K09338 - gmx:100785023 1253.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0931 6 13819675 13823296 Apr6g0931 6 13819675 13823296 ECH
Apr2g1615 2 21904301 21907205 Apr6g0931 6 13819675 13823296 PCT