Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0930 ATGGAGATGCAGGACCAAATAGAAGGCACACGATCAACCATATTTGGCACGGCTAGTAACTGCCTCTCAAATGGGGGCAAACAATCTGAAAATGTTGCCCGTATACCTTCTGTGAGGAAACCATACACCATTACTAAACAAAGGGAAAAGTGGACAGAGGAAGAGCATCAAAAGTTCCTTGAAGCTTTGAAATTATATGGTCGCGGCTGGCGTCAAATTGAAGAGCATATAGGTACCAAAACTGCAGTTCAGATTCGAAGTCATGCTCAAAAGTTTTTCTCTAAGGTTGTGAGAGAATCTGAGGGCAGTGCTGAGAGTTCTATACAGCCAATTAACATACCTCCTCCTCGGCCTAAGAGGAAACCCCTCCATCCATATCCCCGTAAATCAGTTGACTCTTTCAAAGGTCACACTGTACCAAATGAAACAGAAATATTTCCATCGACAAACATGTTAGTTGCAGAGAAAGACACCCGGTCTCCAACCTCTGTGCTATCTACAGTTGGTTCAGAAGCATTTGGGTCTGCATTTTCAGAGCAGACTACCAGATGTCTTTCACCAAACTCTTGCACCACTGATATTCACTCAGTCAGCTTATCACCTGTTGAAAAGGAAAATGATTGCATGACATCTGAACCATCTGAGGAGGAAGAGAAAGGGCCGCTGGCTTCAGTTCCTTTATCCACCATTTCTAACCCAAACATATGCATGAAGTCCGAGTTTAGTTCCAAGGAGTCTGAATGTTGCAAAGATGCTACTGCCAATATGCCACACATCACTAGTATTAAGCTTTTTGGAAGAACAGTCTCTATGGTAGGTAATCAGAAGCCACTGAACATAGATGATGAGAATGGTGAGCCAATAAAGTCTGATGAAGTAGATGATGTTGAGAATGAAAAGCTTGGCCAATCAGCTGAATCCGAGCAAGTAGAAACAAAATTATCACTAGGTTCGTGTGGTGGTGACTGGCACATAACAGCTGATGCTGATGGAGCTAATTTGACCAACATAGAGCCCCCAAAGGAGAATCTATGCCTGAGTGAATGTGCACTTGATGCGTCTTTTCCAAGGTGGAGTTTGTACCAAGGCCTTCCAGCTTTCTACCTCGGACCATGCAATCAGGTCCTAAATCCCATGTCTCTTCAGCCTTCTTTGAAAGCAAGAACAAGAGAGGAGAGTTCTTGCACTGGTTCTAATACTGAATCAGTTTGTGACATGGAAAATCAAGGCAAGAACTCAGATGCTGTTGATTTCGAGTGTCATAAATATCATGAGGGGGGAGGGGCACCCCAGAAGTGTGCGAGGGGTTTTGTACCATACAAAAGATGTTTAGCTAAAAGAGATGGAAATTCTTTAATTGTTGCCATGGAAGAAAGGGAGGGGCAAAGAGCTCGTGTATGCTCATAG 1407 0.435 MEMQDQIEGTRSTIFGTASNCLSNGGKQSENVARIPSVRKPYTITKQREKWTEEEHQKFLEALKLYGRGWRQIEEHIGTKTAVQIRSHAQKFFSKVVRESEGSAESSIQPINIPPPRPKRKPLHPYPRKSVDSFKGHTVPNETEIFPSTNMLVAEKDTRSPTSVLSTVGSEAFGSAFSEQTTRCLSPNSCTTDIHSVSLSPVEKENDCMTSEPSEEEEKGPLASVPLSTISNPNICMKSEFSSKESECCKDATANMPHITSIKLFGRTVSMVGNQKPLNIDDENGEPIKSDEVDDVENEKLGQSAESEQVETKLSLGSCGGDWHITADADGANLTNIEPPKENLCLSECALDASFPRWSLYQGLPAFYLGPCNQVLNPMSLQPSLKARTREESSCTGSNTESVCDMENQGKNSDAVDFECHKYHEGGGAPQKCARGFVPYKRCLAKRDGNSLIVAMEEREGQRARVCS* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0930 468 ProSiteProfiles SANT domain profile. 46 97 IPR017884 -
Apr6g0930 468 Pfam Myb-like DNA-binding domain 48 91 IPR001005 -
Apr6g0930 468 SMART sant 47 95 IPR001005 -
Apr6g0930 468 Gene3D - 50 97 - -
Apr6g0930 468 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 46 95 IPR006447 GO:0003677
Apr6g0930 468 MobiDBLite consensus disorder prediction 201 226 - -
Apr6g0930 468 ProSiteProfiles Myb-like domain profile. 43 93 IPR001005 -
Apr6g0930 468 PANTHER SWI/SNF COMPLEX-RELATED 3 455 - -
Apr6g0930 468 MobiDBLite consensus disorder prediction 103 142 - -
Apr6g0930 468 SUPERFAMILY Homeodomain-like 42 96 IPR009057 -
Apr6g0930 468 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 43 97 IPR017930 -
Apr6g0930 468 CDD SANT 50 93 IPR001005 -
Apr6g0930 468 PANTHER PROTEIN REVEILLE 7-RELATED 3 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0930 Apr-Chr6 13787454 13791739 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Apr6g0930 Myb_DNA-binding 1.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0930 - - gmx:778089 739.954