Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0929 ATGGCTAACAACGTTGTTGCTGTTGTTAAGGTAGCAACTCTTCCTCTTCCTTCATTATCCATAAAACACAATGCTTTCACTTTCCGCCATAAGATTAAGAGCCAAAAACGTAGACTTCATCTGAATTTTTCTCAAACCAATTACACAACAACCTCCTCCTCTTGTTCCTTCTCATCTTCGCCCCTTAAAAACAAAGGTAGTAGTTGCTTTGTTGTGGCGTGTCTTCCTTCTCCTTCTGAATCCTCAAACTTATCTTCTTCTACTACACCCTCTTCTTCAACTAAGCTCTATGTTAGTGGATTATCATTCCGTACAACTGAAGAGAGCTTGCGGAATGCATTTAAGAATTTTGGTCAACTTGTGGAAGCAGTCAATCTGGTGATGGATAAAATTGCAAATAGACCAAGAGGGTTTGCTTTTCTTCGTTATGCAGCTGAAGAAGAGTCTAGGAAAGCGATTGAGGGAATGCATGGAAAGTTCTTGGATGGTAGGGTCATATTTGTGGAAGTTGCTAAACCAAGATCAGAGCTACGGCAAAGATTTAAGCAAGACACTAGATTGTAA 564 0.3989 MANNVVAVVKVATLPLPSLSIKHNAFTFRHKIKSQKRRLHLNFSQTNYTTTSSSCSFSSSPLKNKGSSCFVVACLPSPSESSNLSSSTTPSSSTKLYVSGLSFRTTEESLRNAFKNFGQLVEAVNLVMDKIANRPRGFAFLRYAAEEESRKAIEGMHGKFLDGRVIFVEVAKPRSELRQRFKQDTRL* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0929 187 Gene3D - 77 186 IPR012677 -
Apr6g0929 187 SMART rrm1_1 95 169 IPR000504 GO:0003723
Apr6g0929 187 PANTHER TRANSFORMER-2-RELATED 8 185 - -
Apr6g0929 187 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 94 173 IPR000504 GO:0003723
Apr6g0929 187 SUPERFAMILY RNA-binding domain, RBD 83 182 IPR035979 GO:0003676
Apr6g0929 187 PANTHER RNA-BINDING PROTEIN 1 8 185 - -
Apr6g0929 187 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 96 166 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0929 Apr-Chr6 13783108 13786509 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0929 94 186 Eukaryotic Initiation Factors Gene Family AT4G34110 30.928 1.39e-10 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0929 - - gmx:100305561 196.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0929 6 13783108 13786509 Apr6g0929 6 13783108 13786509 ECH