Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0926 ATGGTCAGAAAGAAGAGAACTGAGGGACCTAGTGGGGGTGAAAGCTCTGATACCCAACGCCCAGCTGAAAGAAGTGCTCCACCCCAACAACAAGCTGCTGCTGCAGGAGGGGCTGGATCCCAGGGAGGTAGAGGTTGGAGTTCTCAAGGAGGACGCGCAGGTTATGGTGGCGGCCGAGGTCGTGGGATGCCCCAACAGCAATATGGTGCCCAACCTGAATATCAAGGTAGGGGAAGGGGAGGGCCTTCTCAACAAGGAGGACGAGGAGGATATGGTGGTGGTCGAGGTGGTGGTGGTGTGGGCAGTGGACGTGGCGTAGGTCCTTCATACGGTGGTCCATCCAGGCCACCGGCACCCGAGCTGCACCAAGCAACCTCAGTTCCATATCAGGCTGGGGTGACTCCTCAGGCCATGTCATCTGAGGCAAGTTCTTCCCAGAAGCTGGAAATTTCAGAATTGGAACAGCAAACGGGGCAGATGTCAATTCATTCTGAAACTAATCCTGCTCCTCCTCCCTCGAGTAAATCATCAATGAGGTTTCCTCTTCGACCAGGAAAGGGTAGCTATGGCACCAGATGTATTGTTAAGGCCAATCATTTCTTTGCTGAGCTACCTAATAAAGATCTGCATCAGTATGATGTAACAATTACTCCTGAAGTGCCATCGAGAGGTGTGAACCGTGCTGTTATGGAGCAGTTGGTGAGGCTGTACCGAGAATCTCACCTGGGTAAGAGACTTCCTGCTTATGATGGGCGCAAGAGCCTCTATACTGCTGGTCCACTTCCCTTTATATCGAAGGAGTTTAGAATCACCCTCATTGATGATGATGAAGGAGCAGGAGGACAGAGGAGGGACAGAGAGTTCAAAGTGGTGATAAAATTTGCTGCACGAGCAGACCTTCACCATTTAGGGCTCTTTTTACAGGGAAGACAAACTGATGCTCCTCAGGAAGCCCTGCAAGTCCTTGACATTGTTCTGCGGGAACTTCCTACTACCAGGTATTGTCCTGTAGGGAGATCATTTTATTCACCTGATCTGGGTAGAAGACAGCCTTTAGGTGAGGGATTGGAAAGCTGGCGTGGTTTCTATCAAAGTATTCGTCCCACTCAGATGGGACTATCATTGAACATTGACATGTCCTCCACTGCATTTATTGAGCCATTGCCAGTAATTGACTTTGTAACTCAATTGCTGAATAGAGATGTATCCTCCCGACCCCTGTCTGATGCTGACCGGGTGAAGATAAAGAAAGCGCTCCGTGGTATCAAAGTTGAAGTAACACATCGTGGAAATATGAGAAGAAAATACCGAATCTCTGGCCTGACTTCACAGGCAACTAGAGAATTGACATTCCCTGTAGATGAAAGGGGGACGATGAAATCTGTTGTGGAGTATTTCTATGATACATATGGTTTTGTTATTCAACACACTCAGTGGCCCTGTCTGCAAGTAGGCAATACACAGAGGCCAAACTATTTACCAATGGAGGTTTGCAAGATTGTAGAGGGTCAAAGATACTCAAAGAGGTTGAATGAGAGACAGATTACTGCTCTGCTAAAAGTCACATGCCAGCGTCCTGTTGAGAGGGAGCGTGACATCATGCAGACAGTACATCACAATGCCTACCATGAGGATCCTTATGCCAAAGAATTTGGAATCAAAATTAGTGAGAAGCTTGCTCAAGTTGAAGCTCGCATCCTTCCTGCACCTTGGCTCAAATATCATGATACGGGTAGAGAAAAAGATTGTCTTCCTCAAGTTGGGCAATGGAATATGATGAACAAGAAAATGGTCAATGGTGGGACAGTCAACAACTGGTTCTGCATAAATTTTTCAAGGAATGTTCAAGATAGTGTTGCCCGGGGTTTTTGTTATGAACTTGCTCAGATGTGTTACATTTCTGGCATGGCATTTAATCCAGAGCCAGTAGTTCCCCCACTTAGTGCACGCCCTGATCAAGTGGAAAAGGTTCTAAAAACTCGATATCATGATGCCAAGAATAAACTGCAGGGAAGGGAGCTTGATTTGCTTATTGTTATTTTGCCTGATAATAATGGCTCTCTTTATGGTGACCTCAAACGAATATGCGAGACAGACCTTGGGCTTGTTTCACAGTGTTGCTTAACTAAGCATGTTTTTAAAATGAGCAAGCAGTACCTTGCAAATGTTGCTTTGAAAATTAATGTTAAGGTTGGAGGTAGGAATACTGTACTTGTCGATGCAATCTCACGACGCATTCCCTTAGTCAGCGACAGGCCCACAATTATTTTTGGAGCTGATGTGACTCATCCGCATCCTGGAGAGGATTCAAGCCCATCAATTGCAGCAGTTGTGGCTTCTCAAGATTGGCCCGAGATTACAAAGTATGCTGGTTTGGTTTGTGCCCAAGCACATAGACAGGAACTCATTCAAGATCTTTTCAAACAATGGCAGGATCCCGTCAGAGGAACATTAACTGGCGGAATGATCAAGGAACTTCTTATATCTTTCCGGCGGGCTACAGGACAGAAGCCACAGCGCATCATATTTTACAGGGATGGTGTGAGTGAGGGGCAGTTTTATCAAGTTTTATTGTTTGAGCTTGATGCTATTCGAAAGGCTTGTGCATCCCTTGAACCCAACTATCAGCCACCTGTAACTTTTGTGGTGGTTCAAAAGCGTCATCACACAAGGCTCTTTGCTAGCAACCATCATGATAAGAGTTCTGTTGACCGGAGTGGCAATATATTACCCGGCACGGTTGTAGACTCCAAAATTTGCCATCCAACCGAATTTGACTTTTATCTCTGTAGCCATGCTGGAATACAGGGTACAAGCCGTCCTGCTCATTACCATGTCTTGTGGGACGAGAACAATTTTACTGCTGATGCTTTGCAAACCCTAACCAACAACCTTTGCTACACTTATGCTAGATGCACCCGTTCTGTTTCAATCGTGCCCCCTGCATATTATGCCCATTTGGCTGCATTTCGGGCAAGGTTTTACATGGAACCCGAGACCTCAGATAGTGGGTCTATGACAAGCGGCGCTGTTGCTGGCCGCGGAATGGGTGGTGGTGGTGCAGGACGAAGCACTCGAGCCCCTGGTGCTAGTGCTGCTGTGAGGCCATTACCTGCTCTTAAGGAGAATGTCAAGAGGGTTATGTTCTATTGCTAA 3156 0.4674 MVRKKRTEGPSGGESSDTQRPAERSAPPQQQAAAAGGAGSQGGRGWSSQGGRAGYGGGRGRGMPQQQYGAQPEYQGRGRGGPSQQGGRGGYGGGRGGGGVGSGRGVGPSYGGPSRPPAPELHQATSVPYQAGVTPQAMSSEASSSQKLEISELEQQTGQMSIHSETNPAPPPSSKSSMRFPLRPGKGSYGTRCIVKANHFFAELPNKDLHQYDVTITPEVPSRGVNRAVMEQLVRLYRESHLGKRLPAYDGRKSLYTAGPLPFISKEFRITLIDDDEGAGGQRRDREFKVVIKFAARADLHHLGLFLQGRQTDAPQEALQVLDIVLRELPTTRYCPVGRSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVTQLLNRDVSSRPLSDADRVKIKKALRGIKVEVTHRGNMRRKYRISGLTSQATRELTFPVDERGTMKSVVEYFYDTYGFVIQHTQWPCLQVGNTQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPVERERDIMQTVHHNAYHEDPYAKEFGIKISEKLAQVEARILPAPWLKYHDTGREKDCLPQVGQWNMMNKKMVNGGTVNNWFCINFSRNVQDSVARGFCYELAQMCYISGMAFNPEPVVPPLSARPDQVEKVLKTRYHDAKNKLQGRELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYLANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEITKYAGLVCAQAHRQELIQDLFKQWQDPVRGTLTGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLFELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFASNHHDKSSVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADALQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMTSGAVAGRGMGGGGAGRSTRAPGASAAVRPLPALKENVKRVMFYC* 1052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0926 1051 Pfam Mid domain of argonaute 585 660 IPR032473 -
Apr6g0926 1051 ProSiteProfiles Piwi domain profile. 676 997 IPR003165 GO:0003676
Apr6g0926 1051 SUPERFAMILY Ribonuclease H-like 662 997 IPR012337 -
Apr6g0926 1051 Pfam Argonaute linker 1 domain 336 386 IPR014811 -
Apr6g0926 1051 PANTHER PROTEIN ARGONAUTE 1A 86 1050 - -
Apr6g0926 1051 Pfam Piwi domain 677 996 IPR003165 GO:0003676
Apr6g0926 1051 CDD PAZ_argonaute_like 387 501 - -
Apr6g0926 1051 Pfam PAZ domain 392 517 IPR003100 GO:0005515
Apr6g0926 1051 SUPERFAMILY PAZ domain 195 539 IPR036085 GO:0005515
Apr6g0926 1051 Pfam N-terminal domain of argonaute 192 326 IPR032474 -
Apr6g0926 1051 SMART PAZ_2_a_3 392 524 IPR003100 GO:0005515
Apr6g0926 1051 MobiDBLite consensus disorder prediction 1002 1029 - -
Apr6g0926 1051 CDD Piwi_ago-like 546 996 IPR045246 -
Apr6g0926 1051 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 86 1050 - -
Apr6g0926 1051 MobiDBLite consensus disorder prediction 12 26 - -
Apr6g0926 1051 MobiDBLite consensus disorder prediction 1 183 - -
Apr6g0926 1051 Pfam Argonaute linker 2 domain 528 574 IPR032472 -
Apr6g0926 1051 MobiDBLite consensus disorder prediction 127 173 - -
Apr6g0926 1051 Gene3D - 745 1051 IPR036397 GO:0003676
Apr6g0926 1051 Gene3D paz domain 381 506 - -
Apr6g0926 1051 Gene3D - 566 739 - -
Apr6g0926 1051 ProSiteProfiles PAZ domain profile. 388 502 IPR003100 GO:0005515
Apr6g0926 1051 SMART Piwi_a_2 676 997 IPR003165 GO:0003676
Apr6g0926 1051 SMART DUF1785_2 335 387 IPR014811 -
Apr6g0926 1051 Pfam Glycine-rich region of argonaut 69 167 IPR024357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0926 Apr-Chr6 13739648 13747011 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0926 73 1051 Eukaryotic Initiation Factors Gene Family AT1G48410 81.827 0.0 1633
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0926 K11593 - gmx:100780375 1820.05