Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0917 ATGAACTCGAAAGCCTCTGTCTCTAAGGAGCTCCATGCCAAACACACCAAGATCTTGGAGGGACTTCTTAAACTACCTGATAATCGGGAATGTGCAGACTGCAGGACAAAGGCACCACGATGGGCAAGTGTGAACTTAGGAATATTCATTTGCATGCAGTGTTCAGGAATTCACCGAAGTCTTGGAGTTCATATATCAAAGGTGCGGTCCACAACTTTGGATACATGGTTACCAGATCAAGTTTCTTTTATGCAATTCATGGGTAATGTCAAGTCAAACATGCACTGGGAGGCTGAACTGCCACCAAATTTTGACAGAAATGGATATGGAATCGAGAAGTTTATTCGTGCCAAGTATATAGAGAAAAGATGGGCTTCAAAAGGTGGACTACAACCAGCTTCAAAGTCAGCTGAAATAATCTTTAACTTGAATAATTCACCACCAGCTTCTAGGGCCAAGAGTGCTATTCAAAAGAACAGAAGATTGTCTCTTGAGGAAAGCATTCTTGTTAACCACATGGCACAAATTCGGCCTTCTGAAACAACATCACATGGGGGCTCCTTAGATTTGCAAAAGAAGATTTCACCACCATTAAAGAGACCATCCGCATCAGTTGATTTTGACAGCTCTGGTGCAAAGAGCAATGGTACTATTGATCTTTTTGGCTTGCTTGATAATAAACAGGATTTCTCAACTACAACTCCTCCAAGCTGGACAACATTTGATTGA 729 0.4156 MNSKASVSKELHAKHTKILEGLLKLPDNRECADCRTKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWLPDQVSFMQFMGNVKSNMHWEAELPPNFDRNGYGIEKFIRAKYIEKRWASKGGLQPASKSAEIIFNLNNSPPASRAKSAIQKNRRLSLEESILVNHMAQIRPSETTSHGGSLDLQKKISPPLKRPSASVDFDSSGAKSNGTIDLFGLLDNKQDFSTTTPPSWTTFD* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0917 242 MobiDBLite consensus disorder prediction 175 189 - -
Apr6g0917 242 SMART arf_gap_3 5 132 IPR001164 GO:0005096
Apr6g0917 242 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Apr6g0917 242 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Apr6g0917 242 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Apr6g0917 242 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 137 IPR001164 GO:0005096
Apr6g0917 242 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD15-RELATED 1 242 - -
Apr6g0917 242 Pfam Putative GTPase activating protein for Arf 17 127 IPR001164 GO:0005096
Apr6g0917 242 Gene3D Arf GTPase activating protein 1 129 IPR038508 -
Apr6g0917 242 MobiDBLite consensus disorder prediction 175 213 - -
Apr6g0917 242 CDD ArfGap 19 119 - -
Apr6g0917 242 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 242 IPR044520 GO:0005096
Apr6g0917 242 SUPERFAMILY ArfGap/RecO-like zinc finger 15 126 IPR037278 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0917 Apr-Chr6 13640765 13644776 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0917 19 119 C2H2 Transcription Factor Family AT4G05330 50.467 7.68e-29 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0917 K12486 - gmx:100802691 380.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0917 6 13640765 13644776 Apr6g0917 6 13640765 13644776 ECH
Apr2g1621 2 21931190 21936729 Apr6g0917 6 13640765 13644776 PCT