LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr6g0912	ATGGCTGTTAGATCATGTTCTTCTTCCTTCACCTATGCATTCACCTATGATGTTTTCCTTAGCTTTAGAGGCTCAGATACACGTCATGGTTTTGTTGGCAATCTATTTAAAGCTCTTCAAGACAAGGGAATTCACACCTTCATTGATGATGAGGGGCTTCAAAGAGGAGAGGAAATAACACCAGCACTTGTTAAGGCAATTGAAGAGTCAAGAATTGCCATCACTGTGCTCTCTAATAACTATGCATATTCTTCATTTTGCTTAGATGAACTTGCCCACATCCTTGAGTGTGTTAAGAGAAAAGGTACATTTGTTTTGCCCGTTTTTTATGACGTTGATCCTTCTCATGTGAGACACCAAAGAGGTAGTTATGGACAAGCATTGGCAAGTCATGAAGAAAGGTTCAAACATAACATGGAGAAATTGCAGAAATGGAAGATGGCTTTGCATCATGTAGCTAACTTCTCTGGCTACCATTTCAAACATGGAGATGGTTATGAATACGAGTTTGTTGGGCAGATTGTTGAGTTGGTTTCCAACAAGATTAATCGTGCTCCTTTACATGTTGCGGATTACCCTGTTGGACTAGAGTCACAGGTGCTAAAAGTAAGGAAGCTTTTGGATGTTGGATCTGATGATGGTGTTCTAATGATAGGGATTCATGGAATTGGTGGTATAGGAAAAACAACACTTGCTCTGGCAGTTTATAATTTGATTGCTGACCATTTTGATGGTTTGTGTTTTCTAGAAAATGTGAGAGAAAATTCAGACAAACATGGGTTACAGCATCTCCAAAGCATCCTACTTTCAGAAGTACTTGGAGAGAAGAAAATTAAGTTATCAAGTGTCAAACAAGGAATTTCAATACTACAACACAGGCTCCAGCGAAAGAAGGTTCTCTTGATTCTAGATGATGTCGACAAGCACGAGCAATTAAATGCCATTGTTGGAAAACCTGATTGGTTTGGTCCTGGCAGTAGAGTCATCATCACGACCCGGGACAAACAGCTACTAGCGTGTCATGAAGTTAAAGGTACACATGAGGTGAAGAAATTGAATAAGAACGATGCTCTTCAATTACTTAGTTGGAAAGCATTTAAATCTGAAAAAGTTGATCCAAGTTATGTGGATGTCTTGAATTGTGCAGTAGCTTATGCTTCTGGTCATCCGTTGGCTTTGGAAGTAATCGGTTCCAACCTGTTCGGTAAAAGTATAGAGCAATGGAAATCTGCTATCAATCAATATAAAAGAATTCCAAATTGTCAAATCCTAAAGATACTTAAAGTAAGCTTTGATGCTTTAGAGGAAGAAGAGAAGAGTGTTTTTCTTGACATTGCCTGTTGCTTTAAAGGATATAACTTAGAAGAGGTTGAAGATATACTTCATGCTCATTACGGTGACTCCATGAAATATCATATTGGGTTGCTGGTTGAAAAATCTCTCATAAAGCTGACTTGGGCTGGTGGGGTGACATTGCATGACTTGATAGAGGACATGGGTAAAGAAATTGTCCGACAGAAATCACCGAAAGATCCTGGGAAGCGCAGTAGATTATGGTTACCGGAAGATATAATTCAAGTTTTGGAAGACAACTCGGGAACTAGTGAAATTGAAATCATATGTCTGGATTTCCCCTTATTTGACAAAGAGGAAATAGTAGAATGGAATCGAAAGGCCTTTAAGAAGATGAAAAATCTCAAAACGCTAATTATTAAAAATGGTCATTTTTCCAAAAGCCCCAAATATCTTCCAAATAGTTTAAGAGTACTGGAATGGTGGAGATATCCTTCACATGATTTACCCTCTGATTTTCATTCAAGGAAACTTGCCATATGCAAGTTACCCCAAAGTTGCTTTACATCACTTGAGTTGGCTGGCTTATTGAAGAAGTTTGTGAATATGAGAGTTTTGAATTTGGACAAGTGTAAGTATTTAATGCAAATACCCGATGTATCTGGTCTCCCAAATTTAGAAAAACTCTCATTTCAACATTGTCAGGATTTAACTACAATTCACAATTCAATTGGATTTCTAGAGAAACTTAAAATCTTGAGTGCTTTAGGTTGCACTAAGCTAAGGAGTTTTCCACCCATCAAGTTGACCTCTCTTGAACAACTCAATCTTTCTCGTTGTTATAGCCTTGAGAGTTTTCCAGAAATATTAGGAACAATGGAAAAAATAACAGAACTTCAATTGGAGTTCACACCTATAAAAGAATTGCCATTTTCATTTCAAAATCTTACTCGGCTTCGAGAATTACAACTGGCTGACTGTGGAATTGTTCAATTACCAAGTAGCATTGTCATGATGCCAGAATTAACTGAATTTATTGCGTGGAGATGGAAAGGGTGGCAATGGCTAAAACATGAAGAGGGTGAAGAAAAAGTGTGCTCAACAGCATCTTCAAAGGTAGAATGTCTTTGGGTCTCACAATGCAACCTCAATGATGAATTTTTTTCAACAGGTCTCACATGGTTTGCTCTTGTGAAAGATTTAGACCTATCGAAGAATAATCTCACAGTTCTTCCTGAATGCATCAAAGAATGTCGATTTTTAAGGAAGCTTAACGTGAATGATTGCAAGAACCTTCGCGAAATTAGAGGGATTCCACCAAACTTAAAACATTTCTTAGCAACTAACTGTAAATCCTTGACTTCCTCGAGTATAAGCATGCTACTGAATCAGGAACTGCATGAAGCTGGAAACACTCAATTTTATTTGCCAGGAGCTAGGATTCCAGTGTGGTTTGGTCACCATAGCAAGGGACCCTCAATTTCTTTCTGGTTTCATAATAAGTTCCCTGTAAAAGTTTTTTGTCTTGTTATTGGACCAATGGATAATGAGTCTGGCATGTTTAGACCTGTTGTTATCATAAATAACAGTAAACGTTTCCTTGATAGTGGCTATTTCATGATGGGAATGGATCACACATATCTTTTTGATCTGCAAAAGATAGAATTCAAAGATAGTCTATATGAAGTGCGTTTAGAAAATGAATGGAACCATGTGGAGGTCACATATGAGGGTTTGGAAGAGATCTCAAGCCTTAAAGAAATTGGAATCCATGTCTTCAAACAAGAAGGTAGCATAGAAGATATTCAATTCGCTGATCCTTATAGCAAGAGAAAATTGGATGATGCTCTCAACAGTTCAGAATCACAAACCTACCAGTTGCTAAAAAAGCATAGATTCGTGGACATGTAA	3204	0.377	MAVRSCSSSFTYAFTYDVFLSFRGSDTRHGFVGNLFKALQDKGIHTFIDDEGLQRGEEITPALVKAIEESRIAITVLSNNYAYSSFCLDELAHILECVKRKGTFVLPVFYDVDPSHVRHQRGSYGQALASHEERFKHNMEKLQKWKMALHHVANFSGYHFKHGDGYEYEFVGQIVELVSNKINRAPLHVADYPVGLESQVLKVRKLLDVGSDDGVLMIGIHGIGGIGKTTLALAVYNLIADHFDGLCFLENVRENSDKHGLQHLQSILLSEVLGEKKIKLSSVKQGISILQHRLQRKKVLLILDDVDKHEQLNAIVGKPDWFGPGSRVIITTRDKQLLACHEVKGTHEVKKLNKNDALQLLSWKAFKSEKVDPSYVDVLNCAVAYASGHPLALEVIGSNLFGKSIEQWKSAINQYKRIPNCQILKILKVSFDALEEEEKSVFLDIACCFKGYNLEEVEDILHAHYGDSMKYHIGLLVEKSLIKLTWAGGVTLHDLIEDMGKEIVRQKSPKDPGKRSRLWLPEDIIQVLEDNSGTSEIEIICLDFPLFDKEEIVEWNRKAFKKMKNLKTLIIKNGHFSKSPKYLPNSLRVLEWWRYPSHDLPSDFHSRKLAICKLPQSCFTSLELAGLLKKFVNMRVLNLDKCKYLMQIPDVSGLPNLEKLSFQHCQDLTTIHNSIGFLEKLKILSALGCTKLRSFPPIKLTSLEQLNLSRCYSLESFPEILGTMEKITELQLEFTPIKELPFSFQNLTRLRELQLADCGIVQLPSSIVMMPELTEFIAWRWKGWQWLKHEEGEEKVCSTASSKVECLWVSQCNLNDEFFSTGLTWFALVKDLDLSKNNLTVLPECIKECRFLRKLNVNDCKNLREIRGIPPNLKHFLATNCKSLTSSSISMLLNQELHEAGNTQFYLPGARIPVWFGHHSKGPSISFWFHNKFPVKVFCLVIGPMDNESGMFRPVVIINNSKRFLDSGYFMMGMDHTYLFDLQKIEFKDSLYEVRLENEWNHVEVTYEGLEEISSLKEIGIHVFKQEGSIEDIQFADPYSKRKLDDALNSSESQTYQLLKKHRFVDM*	1068

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr6g0912	1067	PRINTS	Disease resistance protein signature	217	232	-	-
	Apr6g0912	1067	PRINTS	Disease resistance protein signature	293	307	-	-
	Apr6g0912	1067	PRINTS	Disease resistance protein signature	386	400	-	-
	Apr6g0912	1067	PRINTS	Disease resistance protein signature	698	714	-	-
	Apr6g0912	1067	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	179	445	IPR027417	-
	Apr6g0912	1067	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	18	914	IPR044974	GO:0006952
	Apr6g0912	1067	SMART	till_3	15	155	IPR000157	GO:0007165
	Apr6g0912	1067	SUPERFAMILY	L domain-like	548	902	-	-
	Apr6g0912	1067	Gene3D	-	181	345	IPR027417	-
	Apr6g0912	1067	Gene3D	Ribonuclease Inhibitor	535	790	IPR032675	-
	Apr6g0912	1067	Gene3D	Ribonuclease Inhibitor	792	916	IPR032675	-
	Apr6g0912	1067	SUPERFAMILY	Toll/Interleukin receptor TIR domain	6	158	IPR035897	-
	Apr6g0912	1067	PANTHER	DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS)	18	914	-	-
	Apr6g0912	1067	Pfam	NB-ARC domain	198	417	IPR002182	GO:0043531
	Apr6g0912	1067	ProSiteProfiles	TIR domain profile.	14	182	IPR000157	GO:0007165
	Apr6g0912	1067	Gene3D	-	351	435	IPR042197	-
	Apr6g0912	1067	Pfam	TIR domain	16	184	IPR000157	GO:0007165
	Apr6g0912	1067	SUPERFAMILY	"Winged helix" DNA-binding domain	422	529	IPR036390	-
	Apr6g0912	1067	Gene3D	-	15	180	IPR035897	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr6g0912	Apr-Chr6	13565631	13570039	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Apr6g0912	10	773	WRKY Transcription Factor Family	AT4G12020	31.156	8.67e-79	281

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr6g0912	-		-	gmx:100780257	1699.1