Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0910 ATGTCTTCTGCCGGCGGCGGCGACGGCGGCGGAGGTAGCGGCGTTACCTCCGGAGAAGCTCGCCAATACTTCTGCCACCAGTGCAACGGCACCGTCTATGTTTACCTTTCCTCCTCCTCCGATCTCCTCTGCCCCAATTGCAACGGTGGCTTCCTCGAAGAACTCGAAACCCCAATTCCTAGCCCTAATCCTGCCAATCCATTCTTCTCCTTCTCATCTGACTTCCCTGTCGCCGGCACAGGCTCCATTCCCCTCGTTTTCTCCGGCGGCGCTAACTCCTTTGACGATTTCTCCACCCTATTTGGAAACCGATCCGACGCCGCCGCGGAACCGTTCAACCCCTTCTTGTTCCTCCAGAACTACTTCCAAAACCTAAGAGCCGGCGGCGCCAATGTTCAATTCGTGATCGAGTCCGGCGATCCTGGTGGAACGTTCCGGTTCCCGGGTAACGTCACACACGGCGATTACTTCTTCGGGCCAGGGCTGGAGGAGCTGATCCAGCACCTCGCCGAGAACGATCCGAATCGTTACGGGACCCCGCCGGCGTCTAAGTCCGCCGTAGAGGGACTGCCTGACATTTCGGTGACGGAGGAGCTACTGGCGTCGGATTCCGCACAGTGCGCGGTGTGTAAGGACACCTTTGGCCTTGGCGAAACAGCAAAGCAGATGCCGTGTAAGCATATATATCACGCGGATTGCATTTTACCATGGTTGGAATTGCATAATTCTTGTCCCGTCTGTCGGTATGAGTTGCCCACAGATGATCCTGATTACGAGCAGAGGACTCGTCGCAGTGGTGGCGGTGTTGGTGGTGGTGGGCCGGGTCCCCAGGTGAATTGGAACTTGGATGCAGGGGCTGGTGGTTCCGATGATTCGTCTGGTGGCGGTAGTGGTGGAGAAAATGTTGCGCGGCGGAGGTTTAGGGTGTCTTTGCCGTGGCCGTTTAGGCAATTTGTTTCTTCTGTGGCGGAGACAAGTAATGTTGGGGATGGCAACAATAACAATGACAACAACAACAGCAGCCATAGCGGAAATAGTGGTGGGCAATCGAATCCTAGGGGGAATCAGAATTTTGAGTCGGAGACCAGACAAGAAGATCTCGACTGA 1107 0.5565 MSSAGGGDGGGGSGVTSGEARQYFCHQCNGTVYVYLSSSSDLLCPNCNGGFLEELETPIPSPNPANPFFSFSSDFPVAGTGSIPLVFSGGANSFDDFSTLFGNRSDAAAEPFNPFLFLQNYFQNLRAGGANVQFVIESGDPGGTFRFPGNVTHGDYFFGPGLEELIQHLAENDPNRYGTPPASKSAVEGLPDISVTEELLASDSAQCAVCKDTFGLGETAKQMPCKHIYHADCILPWLELHNSCPVCRYELPTDDPDYEQRTRRSGGGVGGGGPGPQVNWNLDAGAGGSDDSSGGGSGGENVARRRFRVSLPWPFRQFVSSVAETSNVGDGNNNNDNNNSSHSGNSGGQSNPRGNQNFESETRQEDLD* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0910 368 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 168 254 IPR013083 -
Apr6g0910 368 ProSiteProfiles Zinc finger RING-type profile. 207 248 IPR001841 -
Apr6g0910 368 MobiDBLite consensus disorder prediction 324 358 - -
Apr6g0910 368 CDD RING-H2_RNF126_like 206 248 - -
Apr6g0910 368 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1 14 327 - -
Apr6g0910 368 MobiDBLite consensus disorder prediction 324 368 - -
Apr6g0910 368 Pfam Ring finger domain 206 248 IPR001841 -
Apr6g0910 368 MobiDBLite consensus disorder prediction 251 301 - -
Apr6g0910 368 SUPERFAMILY RING/U-box 194 255 - -
Apr6g0910 368 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 14 327 - -
Apr6g0910 368 Pfam zinc-ribbon 22 55 IPR039525 GO:0061630
Apr6g0910 368 SMART ring_2 207 247 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0910 Apr-Chr6 13511705 13518403 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0910 165 263 C3H Transcription Factor Family AT5G15820 53.535 3.26e-34 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0910 - K11982 gmx:100784504 484.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0910 6 13511705 13518403 Apr6g0910 6 13511705 13518403 ECH