Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0876 ATGAGTCCACTTCAAGAGCCTTCATCTTCTAACTCCTTCAACCATGGTTGGACTTATGATGTGTTTGTAAGCTTCCACGGGGAAGATACTCGATATAGTTTCACAGGAAATCTTTGTAATGCTTTGCACCAAAAGGGAATCAACACTTTCAAAGATGACTCAAAACTTAAGAAAGGAGAAGGGATTTCACCTTCTCTTCTCAAAGCAATTGATGAGTCTAGGATTGCAATAATTGTTTTCTCACAAAATTATGCATCCTCAAGTTGGTGTCTTGATGAATTAGTGAGGATCATGGAGCGTATGAAAGAGAAGGGACAGTTGGTGAGGCCAGTTTTCTACTATGTTGATCCTTCAGATGTAAGGCATCAAAGGAGAAGTTTTAGAAGTTCAATGACTAAGCATGAAGAAAATCTCAATATTGACAAAGAAAGGGTGTGTAAATGGAGAACTGCACTGAAAGAAGCAGCTAATTTGTCAGGATGGCATTTCAAATATGGGTATGAGTTTGAATTTATTCAAAGGATTGCTGAAGAAATCTCTAGCAAATTAAATCTTACCTCCTTGCACATAGCTGATCATCCAGTTGGATTGGATTATCGAATGTCAAAAGTGGTATCCCTTCTAGGAATTAAATCTAATGATGAGGTGTGTATGGTTGGAATATATGGATTTGGTGGGATTGGTAAAACCACAATTGCTCGATCTGTCTATAACTTAATTGCTAATAAGTTTGAAGGTTCTAGCTTTCTTGCTGATGTAAGAGAAAATTCAATGAAACGTGGTCTAGTACAACTACAAGAGACCCTTCTCTTTCATTTGCTTGGAGAAAACATCAAGTTGAGTGATGTGAGTGAAGGAATTCCTATAATAAAAAGAAGGCTTCACAACAAGAAGGTCCTTTTGATTCTTGATGATGTGGATAATGTGAAACAACTGTGTTCCCTGGCTGGAAGCCAAGATTGGTTTGGTTCCGGAAGCAGGATTATCATAACAACAAGAAATAAACATTTGCTAGCTATTCATGGGGTTGAAAAAATATATGAAGTGAAAGAATTGAATGATGAAGAAGCTCTTGAACTATTTAGTTTGAATGCTTTTAAAAGAAGGGAGCCTGATGCAAGTTATGCACAGATAGCAAACCGTGTAGTGAAATATGCCAAAGGCCTTCCATTAGCTTTGAATGTAATAGGATCTGATTTATTTGGAAAGACAATAGAAGAATGGGCAAGTGCATTGAAGAAATATGAAACAATCCCAAGCAAAGATATTCTAGATGTACTTAAAGTCAGCTATGATAATTTGGATGATAATGAAAAAGAAATTTTCCTTGACATTGCATGTTTCTTCGAAGGAAATTTGAAGGAGGACGTAGAAAAGACACTGGATGCCTCACGTTTTTGTTCAAAATATGGAATCGGAGTTCTTATTGATAAATCTTTAGTAACAATTAGTGAATCCAATACAGTTAAGATGCATGATCTTATACAAGACCTGGGCAAAGACATTGCTAGAAAGGATTCGCCACATGACCCTGGCAAACGTAGGAGACTGTGGCATCATGAGGATGTTCTTGAGGTCTTGACAAGAAAAACAGGAGCTGATACAATTGAAGGAATAATGTTGGACATGAGCAACCTACAACAAGAAGTTCAGTTAAAAACTGACGCCTTTGAAAAAATGAGGAGACTCAGAATTCTCATAGTTCGGAAAGCACAAGTTTCTGGATCTCCCCAATACCTCCCAAATAATTTGAGATTTCTTGAATGGAATGAATATCCTTTACCATCTTTACCTGCTGATTTTCATCCAGAAGCACTTGTTGTACTCAACTTGCCCCAGAGTCATCTTAAAATGAATGAGCCATTCAAGAAGTTTGAGCATTTGACTTTTATGAACTTCAGCTATTGTGACTCCCTAACAACACTACCTGATGTCTCAACAACCCCTAATCTAACTAGACTTCTTCTTAATAATTGTCCAAACTTAGTGGACATTCATGATTCTGTTGGACATCTTGACAAACTAGTCACATTAAGCACACAAGGATGCCCAAAACTCGTGAGTTTTCCACGAGGTTTGAGATCATCATCTCTTGAATACCTTAATCTTGGCAAATGTTCTAGCATTCAGAGTTTCCCAGATGTATTGGCTAAAGTGGAGAATATGAAAAATATTGATATAGGAGGGACAGCCATAAAAAGATTTCCAAATTCAATTAAAAACTTTAATAGTCTTGAAGAGTTAAGGCTGACATCTTGCCTAAGTTTTGAGGATCTACCAACCAACACAGTATTGTTTCAAAATATTGAAGAGCTTAATGTAGAGCGATGTCAACAACTTCCAAAACTTCTATGGAAGTCATTAGGAGACAGGACGAATTGGAATCCGAAGTTAAGTGGATTGACTCTCAAAAACTGTGATCTATCAGATGAAGATCTTGAGTTAATTCTCAAGTGTTTCCTAAAACTGAAATCCTTGAACCTATCCGATAATAACTTTTTGACCATCCCTGCTTGCATTGAAGATCTTTGCCACCTGTTATTTCTTCATGTGGATAACTGCAAGCTGCTTAGAAATATTTCAGTGCTTCCACAATACCTGCAATACATAGATGCAAGGAATTGCGTATCATTGACTCCCCAATCATCAGATGTAATTTTGAGTCAGGCATTTCAGGAGGTTGAGTACATAGACATTGTTGTGTTCAGGACAAAAATTCCAAGTTGGTTTGATCACTGTAGTAAAGGAAGGTCCTTGACTTTCTGGGTTCGTAGAAAATTCCCTACCATTGCTCTATTTTTTCTTTTAGGAGGTGAATATCAAAGGAAAGTTAATCACACATGTGAATTCCGTTTGGATATCAATGGACTCCAAGTATTTCAACAAAGAAGAGAGTGGCCAGTTGATCATGTATGGCTGTTTGATATGAGAATTCACCTCACTGCCAAAGAGTGGCACAACATTAATGAAAAAATAAAATCTGGTTGGAATCGTGTGGAGATTTTGTGTTCAGTCATGAATGAGCCCAAAAATGTAACTGTTAAATGTTGTGGAATTCATTTATACAAAGATAGAATGAATATTCACCATGTCTCCTTTGTAAATCCTGATCTTCAAGGCTCAAATATAGCCCATGATAACATAAATGACAGTTTGGATATCCATGATGAAGCAAGAGAAGATGTTCTTTTCCCTTCAATATCAGATAAATACTTTGCCAAGAATATATTGGAGTTCATGAGAAATCTTCAATCTAGCAAGAAAAACGGTGGTAATGAGCATGATTATGGTGGGGAGTTGGAACTAAACAGTGAAAGTGACAATGAGGACATGGAAGAGGAACAACATTCAGCTTCCCTCAGTCATCAAATCCTAGGAAACAATGAAGTTGTGAATAATGACAAAGGAAAAGACACCAATTCCTGCAAAATTCTTCTGGTTCCTTTAACTGAAACACAAGAAGAACCTCTTGCTACAAGTATCCATAATAAAGAGCTAATGCTTGTGAAGAAAGAAAAATTGATGGAGAATGAAAATCTGTTTGAATCAGATGTAGAAGCCACATTGAATTTTAATCAAAGTCAAGAAAATATCTTCCATACTCATTTTCCTGAAAGATATGGTAATGGTCAGGGTCAACAAGCTGTGTCAAATGCAGAAGCCTACATAAATATTTTTGAATCTTCCATAAATGAAGACAACATGGAAGCATTTTATGCTTCTCTTGAACCAGAAACCACTTCTCTGTCACATGTCCAAGACATGCAACCCAACAATGTATCTGTCAAGCCTAGGCCTAGTGAAGAAACCCAGAAATGGTTGCAGATTCTACGGGACTTTGTCTCAAAAAAATTCTCTCTTTTGTTGCACCCAGGACGTTCTGGATTGATGAAAGAGTCCCTAAATTACTTCCGCAGTTTGACACCAGATGAAGGACTTTCTCTGAGAACTAAATCAGCAATACAACAACTTTCACTAAGTTTCGCTAAATGGAATTTGGACTATAACAATGCAAACCTTAAACTTGAGTCAGCAACTGCAGACCTATCAAAAGCTGAGAAATTGAAAGATGATCTTAAAGCTAATGTTAAAGAATTCCAGGACATGGACATGGTGGAGAAGTGTTTGTGTAATCAATTGTCCATCTTGCATAAAGAGAAGAGAGACCTTGAAGAGAAAATCAATGCCATAAAAGCTGAGATTGCAGATTCTACAGCACAGAGAGACATAGTTGCTAAGAGAAAGAGAGAATTGTTTCATGAAGGAAGAGTGATGAAAGCCGAAACGGATGATTTGAGGAACCAAGTGCCAAGGCTGAAAGCTGATGAGGAATGGGCAAAATTAACACAAGCCAATATTGAAGCAGAGTGGTCAAAGATTGGAGAACAATTCATTCGAAGCATGCATTTTGAAGACTAA 4419 0.3707 MSPLQEPSSSNSFNHGWTYDVFVSFHGEDTRYSFTGNLCNALHQKGINTFKDDSKLKKGEGISPSLLKAIDESRIAIIVFSQNYASSSWCLDELVRIMERMKEKGQLVRPVFYYVDPSDVRHQRRSFRSSMTKHEENLNIDKERVCKWRTALKEAANLSGWHFKYGYEFEFIQRIAEEISSKLNLTSLHIADHPVGLDYRMSKVVSLLGIKSNDEVCMVGIYGFGGIGKTTIARSVYNLIANKFEGSSFLADVRENSMKRGLVQLQETLLFHLLGENIKLSDVSEGIPIIKRRLHNKKVLLILDDVDNVKQLCSLAGSQDWFGSGSRIIITTRNKHLLAIHGVEKIYEVKELNDEEALELFSLNAFKRREPDASYAQIANRVVKYAKGLPLALNVIGSDLFGKTIEEWASALKKYETIPSKDILDVLKVSYDNLDDNEKEIFLDIACFFEGNLKEDVEKTLDASRFCSKYGIGVLIDKSLVTISESNTVKMHDLIQDLGKDIARKDSPHDPGKRRRLWHHEDVLEVLTRKTGADTIEGIMLDMSNLQQEVQLKTDAFEKMRRLRILIVRKAQVSGSPQYLPNNLRFLEWNEYPLPSLPADFHPEALVVLNLPQSHLKMNEPFKKFEHLTFMNFSYCDSLTTLPDVSTTPNLTRLLLNNCPNLVDIHDSVGHLDKLVTLSTQGCPKLVSFPRGLRSSSLEYLNLGKCSSIQSFPDVLAKVENMKNIDIGGTAIKRFPNSIKNFNSLEELRLTSCLSFEDLPTNTVLFQNIEELNVERCQQLPKLLWKSLGDRTNWNPKLSGLTLKNCDLSDEDLELILKCFLKLKSLNLSDNNFLTIPACIEDLCHLLFLHVDNCKLLRNISVLPQYLQYIDARNCVSLTPQSSDVILSQAFQEVEYIDIVVFRTKIPSWFDHCSKGRSLTFWVRRKFPTIALFFLLGGEYQRKVNHTCEFRLDINGLQVFQQRREWPVDHVWLFDMRIHLTAKEWHNINEKIKSGWNRVEILCSVMNEPKNVTVKCCGIHLYKDRMNIHHVSFVNPDLQGSNIAHDNINDSLDIHDEAREDVLFPSISDKYFAKNILEFMRNLQSSKKNGGNEHDYGGELELNSESDNEDMEEEQHSASLSHQILGNNEVVNNDKGKDTNSCKILLVPLTETQEEPLATSIHNKELMLVKKEKLMENENLFESDVEATLNFNQSQENIFHTHFPERYGNGQGQQAVSNAEAYINIFESSINEDNMEAFYASLEPETTSLSHVQDMQPNNVSVKPRPSEETQKWLQILRDFVSKKFSLLLHPGRSGLMKESLNYFRSLTPDEGLSLRTKSAIQQLSLSFAKWNLDYNNANLKLESATADLSKAEKLKDDLKANVKEFQDMDMVEKCLCNQLSILHKEKRDLEEKINAIKAEIADSTAQRDIVAKRKRELFHEGRVMKAETDDLRNQVPRLKADEEWAKLTQANIEAEWSKIGEQFIRSMHFED* 1473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0876 1472 Pfam NB-ARC domain 199 421 IPR002182 GO:0043531
Apr6g0876 1472 Gene3D - 189 346 IPR027417 -
Apr6g0876 1472 SMART till_3 18 158 IPR000157 GO:0007165
Apr6g0876 1472 MobiDBLite consensus disorder prediction 1087 1119 - -
Apr6g0876 1472 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 445 IPR027417 -
Apr6g0876 1472 Gene3D Ribonuclease Inhibitor 696 922 IPR032675 -
Apr6g0876 1472 Gene3D Ribonuclease Inhibitor 539 695 IPR032675 -
Apr6g0876 1472 Coils Coil 1380 1407 - -
Apr6g0876 1472 Coils Coil 1335 1369 - -
Apr6g0876 1472 SUPERFAMILY L domain-like 541 884 - -
Apr6g0876 1472 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 1314 1446 - -
Apr6g0876 1472 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 13 961 - -
Apr6g0876 1472 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 828 1278 - -
Apr6g0876 1472 Gene3D - 13 188 IPR035897 -
Apr6g0876 1472 PRINTS Disease resistance protein signature 218 233 - -
Apr6g0876 1472 PRINTS Disease resistance protein signature 293 307 - -
Apr6g0876 1472 PRINTS Disease resistance protein signature 386 400 - -
Apr6g0876 1472 PRINTS Disease resistance protein signature 693 709 - -
Apr6g0876 1472 ProSiteProfiles Leucine-rich repeat profile. 822 844 IPR001611 GO:0005515
Apr6g0876 1472 SUPERFAMILY "Winged helix" DNA-binding domain 422 527 IPR036390 -
Apr6g0876 1472 SUPERFAMILY Toll/Interleukin receptor TIR domain 8 161 IPR035897 -
Apr6g0876 1472 Pfam TIR domain 19 187 IPR000157 GO:0007165
Apr6g0876 1472 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 828 1278 IPR044974 GO:0006952
Apr6g0876 1472 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1314 1446 IPR044974 GO:0006952
Apr6g0876 1472 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 13 961 IPR044974 GO:0006952
Apr6g0876 1472 ProSiteProfiles TIR domain profile. 17 183 IPR000157 GO:0007165
Apr6g0876 1472 Gene3D - 351 435 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0876 Apr-Chr6 13238440 13246713 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0876 13 783 WRKY Transcription Factor Family AT4G12020 32.872 1.25e-103 364
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0876 - - lja:Lj2g3v0582820.1 2097.4