Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0875 ATGGCTGTGCCACCATTCCTCAACGCTTCAATTAGTTATGAATTCACCTATGATGTGTTCCTCAGTTTCAGAGGCTCTGATACTCGCTACGGTTTCATTGGCAATCTCTACAAAGCTCTTCATGACAGAGGAATCCGAACCTTTATTGATGATGAGGAGCTTCAGAGAGGGGAAGAAATCACACCAGCACTTGTCAAGGCCATTGAAGAGTCAAGGATTGCCATTCCTGTCTTCTCCAATAACTATGCTGCTTCTTCTTTTTGCTTAGATGAACTTGTCAACATCATTCATAGCTTTCAAGCAAAGGGTAGGTTGGTTTTGCCCGTTTTTTACCATGTGGATCCTTCCCACGTGCGGCATCAGAGAGGGACTTATGGTGAAGCATTGGCTAGGCAGGAACTGAAGTTCAAGAACAACATGGAAAAGGTGCAGAATTGGCGAATGGCTCTTCGCCAAGTGGCTAACTTGTCTGGCTGGCATTTCAAACACGGGGATGGATATGAACATGAGTTTATCGAGAAGATAGTTAAAGATGTCTCAAGAATGATTAAACATGTTGCTTTTCCGATTGCTGATTACCCAGTTGGATTGGACTCCCACGTGAAAAATGTAATTTCGCTTCTGGAAGTTGGTTTAGATGATAGAGTCCATGTGGTTGGTATCCATGGAATTGGAGGAATAGGTAAAACTACACTTGCTGTAGCAGTTTATAATTTCATTGCTGACTGTTTTCGAGGCTTATGTTTTCTTCCAAGTGTTAGAGAAAAATCAAACAAACACGGGTTAGTACATCTCCAAAAGATCCTTCTTTCAGAATTACTTGGAGAGAATGAAATTGAGTTGGCAAGTGTTAGACAAGGAATTTCAATAATACGACATAGGCTCCAAGGGAAGAAGGTTCTTTTGATTCTAGATGATGTTGACAATCTACAACAATTGGAGGCCATGGTTGGAGGATTTGATTGGTTTGGTTCTGGAAGCAGGGTTATTATTACAACTCGGGACAAACACTTGTTAGCAAGACATGGTGTTACCAGAACATATCAATTAAAGGAGTTAAGTAAGAGAGATGCTCTTCAATTGCTTTGTTGGAAGGCTTTTAAAACAGAAAAAGTTGATCCAGATTACATGGATGTCTTGAACCGTGCAGTAGCTTATGCTGCTGGACTTCCATTGGCATTGGTAGTAATAGGTTCCAATTTGTTTGGAAAAAGTATAGAAGAATGGCAATCTGCATTAGATGGGTATAAAAGGATTCCTGATAAACAGATCCAAAAGATACTCAAAGTAAGCTTTGATGCTTTGAAGGAAGATGAACAGTGTGTTTTTCTTGATATTGCTTGTTGCTTCAAAGGATATCGATTGGCTGAGATTGAAGATATACTCTATGCTCATCATGGTAGCTGCATGAAATATCAAATTGGAGTGTTGCTTGAAAAATCTCTCATAAACCTTAGTTCAAATGATAAGGTGACATTACATGATTTGATAGAGGACATGGGTAAAGAAATTGTCCGACAAGAATCACCAATGGAGCCTGGGAAACGCAGTAGGTTATGGTTTCCAAAGGATATAGTTCATGTTTTGGAAGAAAATACGGGAACTAGTAACATTGAAATCATACATCTGAATTTCCCCTTTTTTGAAGAAGTAGTAGTAGATTGGGATGGAGAAGCCTTCAAGAAGATGAAAAACCTCAAAACACTTATTATTAAAATAGGCTGTTTTTCCAAGGGTCCCAAACATCTTCCAAATAGTTTAAGATTACTGGAGTGGTGGAGATATCCTTCACAAGATTTACCATTTGATTTTTATCCAAAGGAACTTGCCACATGCAAGTTTCCCTATGATCACTTTACATCATTCAAGTGGGCTAGCTTTGTGAATAAGTTCGTGAATATAAGGGTTTTAAACTTTGACTCATGTCAGTGTTTAACTCAGATAAATGACTTATCTGGTCTCCCAAATTTAGAAGAACTTTCATTTTATGGTTGTTATAATTTAGTTACAATTCATGATTCAGTTGGCTTACTAAACAGACTTAAAGTCTTGAGAGCTGAAGGTTGCATGAAGCTTAGGATTTTTCCACCCCTCAAGTTGGCGTCTCTAGAAAAACTTGAACTTTCATATTGTTCAAGTCTAGAAAGATTTCCAGAAATATTAGGAAAGATGGAAAACATAACAGAGCTTATGTTGTTTCAGGTTTCCATAAAAGAATTTCCATTTTCATTTCGAAATCTAACTCGGCTTCAGAGACTAACAATGGATGCTATCGAAGATGTTAAGTTACCAGGTAGCATTGTCACGATGCCAGAACTAGCTGTGATTTCTATTTTCATTTTTAAAGGAGAACTATTGCTAAAACCGGAAGAGGGTAAAGAAAAAGTGAGCTTGATGATGTCTTCAAATGTGACACATCTTTATCTCCAATACACCAACCTGTCAAATGAATCTTTGGCAATAGGTCTCACATGGTTTGCTAATGTTAAAGAATTAGTCATATCGTGCAGTAATTTCACAATTCTTCCTGAATGCATCAAAGAATGTCACTTTTTACGGAAGCTTATGTTGAATGATTGCTATTGTCTCGAAGAAATCCAAGGGATTCCGCCAAACTTAAATTATTTCAATGCAATAAACTGCATATCCTTGACTTCCTCATCTAGAAGCATGTTACTAAATCAGGAATTGCATGAAGCTGGAAACACTGAATTTTGTTTTCCAGGAGCAAGGATTCCAGAGTGGTTTGAGCATCAAAGCATGGAACCATCAATATCTTTTTGGTTTCGTAACAAATTTCCTGGCATAGCTATCTGCATTGTTTCTTCCTTGACATGGGGTGAATATGATATGGATGTGATCATCAGTGGCAATGAATTTTTCTTTACTATTGAGCATTCAGTTGTTGACATTATGGAACTGGATCATACCTATCTTTTTGATATGCAAATGAAAAAATTCAATGATGATCCGGTCAAATCACTTTCAGAAAATGAATGGAACCTTGCAACAATTACATGTGAGGGTGCATCCACTATCGGGATTCATGTATTCAAACAGGAAAGGAGCAAGGGGGATATTAGATTCACCATTCCTTTTTGA 3102 0.3775 MAVPPFLNASISYEFTYDVFLSFRGSDTRYGFIGNLYKALHDRGIRTFIDDEELQRGEEITPALVKAIEESRIAIPVFSNNYAASSFCLDELVNIIHSFQAKGRLVLPVFYHVDPSHVRHQRGTYGEALARQELKFKNNMEKVQNWRMALRQVANLSGWHFKHGDGYEHEFIEKIVKDVSRMIKHVAFPIADYPVGLDSHVKNVISLLEVGLDDRVHVVGIHGIGGIGKTTLAVAVYNFIADCFRGLCFLPSVREKSNKHGLVHLQKILLSELLGENEIELASVRQGISIIRHRLQGKKVLLILDDVDNLQQLEAMVGGFDWFGSGSRVIITTRDKHLLARHGVTRTYQLKELSKRDALQLLCWKAFKTEKVDPDYMDVLNRAVAYAAGLPLALVVIGSNLFGKSIEEWQSALDGYKRIPDKQIQKILKVSFDALKEDEQCVFLDIACCFKGYRLAEIEDILYAHHGSCMKYQIGVLLEKSLINLSSNDKVTLHDLIEDMGKEIVRQESPMEPGKRSRLWFPKDIVHVLEENTGTSNIEIIHLNFPFFEEVVVDWDGEAFKKMKNLKTLIIKIGCFSKGPKHLPNSLRLLEWWRYPSQDLPFDFYPKELATCKFPYDHFTSFKWASFVNKFVNIRVLNFDSCQCLTQINDLSGLPNLEELSFYGCYNLVTIHDSVGLLNRLKVLRAEGCMKLRIFPPLKLASLEKLELSYCSSLERFPEILGKMENITELMLFQVSIKEFPFSFRNLTRLQRLTMDAIEDVKLPGSIVTMPELAVISIFIFKGELLLKPEEGKEKVSLMMSSNVTHLYLQYTNLSNESLAIGLTWFANVKELVISCSNFTILPECIKECHFLRKLMLNDCYCLEEIQGIPPNLNYFNAINCISLTSSSRSMLLNQELHEAGNTEFCFPGARIPEWFEHQSMEPSISFWFRNKFPGIAICIVSSLTWGEYDMDVIISGNEFFFTIEHSVVDIMELDHTYLFDMQMKKFNDDPVKSLSENEWNLATITCEGASTIGIHVFKQERSKGDIRFTIPF* 1034
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0875 1033 ProSiteProfiles TIR domain profile. 15 183 IPR000157 GO:0007165
Apr6g0875 1033 SMART till_3 16 156 IPR000157 GO:0007165
Apr6g0875 1033 Pfam NB-ARC domain 199 429 IPR002182 GO:0043531
Apr6g0875 1033 PANTHER ARCHAEAL ATPASE 27 1006 - -
Apr6g0875 1033 Pfam C-JID domain 907 997 IPR045344 -
Apr6g0875 1033 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 27 1006 IPR044974 GO:0006952
Apr6g0875 1033 Pfam TIR domain 17 182 IPR000157 GO:0007165
Apr6g0875 1033 Gene3D Ribonuclease Inhibitor 521 784 IPR032675 -
Apr6g0875 1033 Gene3D Ribonuclease Inhibitor 791 918 IPR032675 -
Apr6g0875 1033 Gene3D - 352 436 IPR042197 -
Apr6g0875 1033 Gene3D - 14 180 IPR035897 -
Apr6g0875 1033 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 446 IPR027417 -
Apr6g0875 1033 Gene3D - 181 345 IPR027417 -
Apr6g0875 1033 SUPERFAMILY L domain-like 552 906 - -
Apr6g0875 1033 PRINTS Disease resistance protein signature 218 233 - -
Apr6g0875 1033 PRINTS Disease resistance protein signature 294 308 - -
Apr6g0875 1033 PRINTS Disease resistance protein signature 387 401 - -
Apr6g0875 1033 PRINTS Disease resistance protein signature 698 714 - -
Apr6g0875 1033 SUPERFAMILY "Winged helix" DNA-binding domain 423 530 IPR036390 -
Apr6g0875 1033 SMART AAA_5 215 353 IPR003593 -
Apr6g0875 1033 SUPERFAMILY Toll/Interleukin receptor TIR domain 9 159 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0875 Apr-Chr6 13231052 13234843 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0875 17 778 WRKY Transcription Factor Family AT4G12020 29.695 2.00e-73 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0875 - - gmx:100780257 1242.64