Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0874 ATGAAGTATATACTTCCCGAAGGTGTATGCATAGATAAGGTGCTTGTTCATGATAAGAAGAGTTTGTGTATGACTCCTGATATGAAGATCACGTTGATATTTGAGGTTGTGGAAGATCGTTCTGGCGAATCTGCTGATCTGGCTCTTCGGCAATATTTTAATTCTAGGCTGATTGATTTCTTTAATATGCATCCTGAGCTTGAGAAATTTGGAAGCGTGAATGATTCAAAAGAACTCATGCCGTCAATTTTTTTTGGCTTTGTTGTTGATAAGGTTACTGATATTCCGGAGGCCATACTGCCAGAACCCTTTAGTCAAAAAGCTTGTAGCTTGATTTGTGAAGATTCACATGTTAAAGAATTTACATTTGAATCTTCACATGCAAATTCTTCAACAGCACGTGTGTCAACTTCCACTCAAATTGAAACGTTGCTGGAGAAGAAATTTCAATTGTATCAATCTTTTAAAAGACATTTTTCTTGGAAGAGTGTTGCTGAACAGACAGAAAAAGTCCAGTGCTTGTCATCCACAAAAACTACGCCACCAGCTCATGCATCTGATTGCCTGGATAACCAAGAAAGCGAAAACACATGGCAGAAAGAATATGCACCTTTATCTGATCTTGCAGATAATCTGAAAACAGAAAAAGGGCACCAGAACGAATCACCAGAAGTGAAAACTCATGTTAATAATGTTATTAATACACCAGTAAATGTGATCTGCCCTCCACATTCTGTTAGTTGCAATAATTCTGAAAGTCCAGATATGAAAAATGTCTCTTGCTCTGCTGATAGTTTAATGACAGAGACACCTGTCCAGTCAGCACCTGATAGATTATTGCCCACATCTGATGTTAAGCTTCAGAACATGCCTAGCCAAAAGTCAACAGCATGTCATAAGCCAGCAAAAAGAGTGCTTGACTTTTCCCTCATGGAAGGTGATGATGGCTTGGACATTAGAGTAGACAAGTTAGAATCTAGTGAAGCTCCGCCTGAATTTGATCGCTTCCCTGAATCTAGGAGAGGATGGTGTGAGGATTGCAATTCTTTTGGTTCTGTTTCTGTACATCAGGAGGCAGAAGAGAGCCTTGGTAACTCTTTTGAAAAAACCAACCAAAATCAAGCTGGTTTTGATACACTGCATAAAAAATCCTCATCATTGCTGAATCTGGTTAATGTGATTCACTCTATATTTCAATCTGTCAAAAGAGCTCCACTCACGAAAGAGGAGCTCCTGCAAAAGATACTCATGAACAGTTTTGATTTTGTTGAGATTAGAGAAGTTGAAGAACAGATTGAATCTCTGGAAAAGTTGGTGCCAGACTGGATCTGCAAGAAGTTGGTTCCTACTGGAGATGTTATGTACTGCATAAAAGAAGTTTCAGATTTGGACTCAGTTCGATCAAGGCTTTTCAGCAATGTGACTGTCTAA 1431 0.3892 MKYILPEGVCIDKVLVHDKKSLCMTPDMKITLIFEVVEDRSGESADLALRQYFNSRLIDFFNMHPELEKFGSVNDSKELMPSIFFGFVVDKVTDIPEAILPEPFSQKACSLICEDSHVKEFTFESSHANSSTARVSTSTQIETLLEKKFQLYQSFKRHFSWKSVAEQTEKVQCLSSTKTTPPAHASDCLDNQESENTWQKEYAPLSDLADNLKTEKGHQNESPEVKTHVNNVINTPVNVICPPHSVSCNNSESPDMKNVSCSADSLMTETPVQSAPDRLLPTSDVKLQNMPSQKSTACHKPAKRVLDFSLMEGDDGLDIRVDKLESSEAPPEFDRFPESRRGWCEDCNSFGSVSVHQEAEESLGNSFEKTNQNQAGFDTLHKKSSSLLNLVNVIHSIFQSVKRAPLTKEELLQKILMNSFDFVEIREVEEQIESLEKLVPDWICKKLVPTGDVMYCIKEVSDLDSVRSRLFSNVTV* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0874 476 Coils Coil 425 445 - -
Apr6g0874 476 Gene3D - 378 475 IPR038090 -
Apr6g0874 476 PANTHER EXPRESSED PROTEIN 1 472 - -
Apr6g0874 476 SUPERFAMILY "Winged helix" DNA-binding domain 1 104 IPR036390 -
Apr6g0874 476 PANTHER DNA REPLICATION FACTOR CDT1 1 472 IPR045173 GO:0003677|GO:0030174|GO:0071163
Apr6g0874 476 Pfam DNA replication factor Cdt1 C-terminal domain 378 443 IPR032054 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0874 Apr-Chr6 13225792 13228956 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0874 386 470 Core DNA Replication Machinery Family AT3G54710 44.706 2.30e-16 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0874 K10727 - gmx:102670055 581.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0874 6 13225792 13228956 Apr6g0874 6 13225792 13228956 ECH