Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0871 ATGTCATCTTCAACCCCTCCTCAAGTCATAACCTGCAAAGCTGCAGTGGCATGGGGTGCTGGAGAAGCATTGGTAATGGAGGAAGTGCAAGTGAGTCCTCCACAACCATCGGAGATTAGGATTAAAGTTGTATCCACCTCTCTCTGTCGCAGTGATCTCTCTGCTTGGAAATCTCATGCCATATTTCCTCGCATATTTGGCCATGAAGCATCAGGGATTGTTGAGAGTGTGGGACAAGGAGTGACTGAATTCAAAGAGGGAGATCATGTACTAACAGTATTCATTGGAGAGTGCATGGCATGCAGGCTGTGCACATCAGGAAAAACTAATATTTGTCAGGTTTTGGGATTGGAAAGGAAGGGTTTAATGCATAGTGATCAGAAGACACGCTTCTCAGTAAAAGGGAAGCCTGTTTATCATTATTGTGCGGTTTCAAGTTTCAGTGAATATACAGTAGTCCATTCGGGATGTGCAGTGAAAATCAGCCCACGTGCACCTCTTGAGAAAATATGCCTTCTGAGCTGTGGGGTTGCTGCAGGTTTGGGTGCAGCATGGAATGTTGCTGATGTGTCAAAAGGATCAACTGTGGTGATTTTTGGTCTTGGAACTGTAGGCCTATCTGTTGCACAAGGTGCCAAACAAAGAGGTGCATCTCGAATAATTGGTGTGGACAACAATCCACAGAAGTGTGAAAATGCCAAAGCTTTTGGGTTTACAGAAGTTGTTGACCCGAATTCCTATAAAGAACCTATTGCTGAGGTTATTAAGCGCATTACTGATGGTGGGGCAGATTTTTCTTTTGAATGTGTAGGTGACACTGATATGATAACCACTGCATTGCAATCATGCTGTGATGGATGGGGTTTGACTGTAACACTTGGCGTGCCAAAGGTGAAGCCTGAAATGTCAGCACATTATGCACTGTTGCTAATGGGAAGAACATTGAAAGGATCTCTATTTGGAGGATGGAAACCTAAATCTGATCTTCCTTCATTAGTGGAGAAGTATGTGAACAAGGAAATCCAAATAGATGACTACATAACACACAATTTACCATTTGATGACATTAACAAAGCTTTCAATCTCATGAAAGAAGGGAAGTGTCTGCGTTGCGTTATCCACATGCCAAAGTAA 1134 0.4303 MSSSTPPQVITCKAAVAWGAGEALVMEEVQVSPPQPSEIRIKVVSTSLCRSDLSAWKSHAIFPRIFGHEASGIVESVGQGVTEFKEGDHVLTVFIGECMACRLCTSGKTNICQVLGLERKGLMHSDQKTRFSVKGKPVYHYCAVSSFSEYTVVHSGCAVKISPRAPLEKICLLSCGVAAGLGAAWNVADVSKGSTVVIFGLGTVGLSVAQGAKQRGASRIIGVDNNPQKCENAKAFGFTEVVDPNSYKEPIAEVIKRITDGGADFSFECVGDTDMITTALQSCCDGWGLTVTLGVPKVKPEMSAHYALLLMGRTLKGSLFGGWKPKSDLPSLVEKYVNKEIQIDDYITHNLPFDDINKAFNLMKEGKCLRCVIHMPK* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0871 377 CDD alcohol_DH_plants 10 374 - -
Apr6g0871 377 Pfam Zinc-binding dehydrogenase 204 327 IPR013149 -
Apr6g0871 377 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 67 81 IPR002328 GO:0008270|GO:0016491
Apr6g0871 377 Gene3D - 15 370 - -
Apr6g0871 377 SUPERFAMILY GroES-like 322 374 IPR011032 -
Apr6g0871 377 Pfam Alcohol dehydrogenase GroES-like domain 37 160 IPR013154 -
Apr6g0871 377 SUPERFAMILY GroES-like 5 185 IPR011032 -
Apr6g0871 377 PANTHER ALCOHOL DEHYDROGENASE 6 375 - -
Apr6g0871 377 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 166 339 IPR036291 -
Apr6g0871 377 Gene3D - 180 318 - -
Apr6g0871 377 PANTHER ALCOHOL DEHYDROGENASE-LIKE 6 6 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0871 Apr-Chr6 13197659 13202047 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0871 15 112 Monolignol Biosynthesis Gene Families AT2G21890 37.143 3.15e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0871 K00001 - gmx:100819938 716.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0871 6 13197659 13202047 Apr6g0871 6 13197659 13202047 ECH