Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0844 ATGGGTTTGATTGATATATGTGCTGTGAGTTGGGTTCCTGTGACACTAGCTGGTAAGAAGATGGATAAAGAAGGTGGTGCAAACCATGGTGATTATGTGCATGATATAGAAAATGAAGGTCCATTGGATGGGAATGAGGAGATTGGAAGGTACTGGTCAGGGTTATCTGACAAAAATGTGAGCTATTCAAAGCCACTTCTTGTGAAGAGGGCTAACACCACATCCCAGATTGCCATTGTTGGTGCCAACCTCTGCCCTATTGAAAGCCTTGACTATGAGATTTTTGATAATGAAATATTTAAGCAGGACTGGAGGTCCAGGAAGAAGGTTCAGATATTACAATATGTGATGCTTAAGTGGGGATTTGCTCTTCTTATTGGATTAGGTACTGGACTGGTTGGCTTCTTTAATAGTTTTGCAGTTGAGAACATAGCTGGTTTCAAGCTACTTATGACAACAAGTCTCATGTCTAAACACAGATATCTTGAGGCTTTTCTTGCATATACTGGTGTGAATATATGTTTAGCAGCTGCTGCTGCAGCACTATGTGCTTTCATTGCTCCAGCAGCTGCAGGCTCTGGCATTCCAGAGGTAAAAGCATATCTCAATGGTGTGGATGCTCACTCTATCCTGGCTCCAAGCACCCTTTTTGTGAAGATTTTGGGTTCCATCCTTGGAGTTTCTGCTGGATTTGTGGTCGGCAAGGAAGGACCTATGGTACATACAGGTGCATGCATAGCTTCTTTACTGGGGCAAGGTGGATCTCGCAAATATCACTTGACTTGCACTTGGCTCAGGTATTTCAAAAATGACCGAGACCGGCGAGACATGATTACTTGTGGTGCAGCTGCTGGTGTTGCTGCTGCCTTTCGTGCACCAGTAGGTGGTGTCCTCTTTGCCCTTGAAGAGGCAGCTTCATGGTGGAGGAGCGCTCTTCTATGGAGGACATTTTTCACAACGGCAGTAGTTGCTATTGTTTTAAGAGTTGCAATTCAGTTTTGTGCCACGGGGAGATGTGGGCTATTTGGGGAAGGTGGTCTCATAATGTATGACATTGGTTCGGCCAATGTAACATATAATGTTGGTGATATATTAGCAGTAGTGATTTTGGGAATCATTGCTGGCATTCTTGGAAGCCTATATAATTACCTTGTGGATAAGGTTGTTCGTACGTATAGCATCATCAATGAAAAAGGTCCAGCTTACAAAATCTCTCTTGTTGTCACAATTGCTCTTTTGACATCATGTTGCTATTATTTCCTACCATGGATTGCAAACTGCACCCCTTGTCCCGCTAATGTGACAGTGAACTGTCCTTCTAATGATGAGTCTGGAGATTACAAAAGCTTTCAATGTCCACCAGGCTACTACAATGATCTTGCTTCTCTCTTTCTAAACACCAATGATGATGCTATTCGTAATCTATTCAGCCCCAAGATAACCAAAGAGTTTCATATTTCTAGTTTGTTTATCTACTTTGCTACTATTTACTGTCTTGGTATAGTCACTTATGGTATTGCTATTCCATCTGGACTCTTCATTCCTGTGATACTTGCTGGTGCTGGCTATGGCCGTCTTATTGGTCGGCTCTTTGAACCGATCACCAAGCTTGACAGAGGACTCTTTGCCTTACTTGGAGCTGCTTCCTTCCTTGGTGGCACCATGAGAATGACAGTTTCTATTTGTGTCATATTGCTTGAGCTCACTAATGATCTCTTGTTACTTCCACTTGTGATGTTGGTCTTGTTAGTCTCAAAAACTGTGGCTGATAATTTCAACAAGGGTGTCTATGATCAAATACTTAAGATCAAAGGACTTCCTTATTTGGAGGCTCATGCAGAACCTTACATGAGGAATTTAGTTACAAGGGATGTTCTCTCAGGTCCACTAATAACCTTTTATGGCATTGAAAAGGTGGGGAATATACTACATGCTTTGAAAACTACAGGGCATAATGGGTTTCCTGTCATTGATGAACCACCTATTTCAGATGCACCAGAGTTGTGTGGGCTTGTACTGAGGTCTCACTTACTAGTGTTACTGAAGGAGAAGTCTTTTTCAAGCGAAAGGGATCTCGCGGATCAAAGTATCTTCCAAAGAATTTCAGCATTAGATTTTGGAAAGGCAGGATCAGGGAAGGGCATCAAACTAGAGGATCTTGATATCCAAGAGGAAGAGATGGATATGTATGTTGATCTCCATCCCATAACTAATGCATCTCCTTATACTGTGATTGAGACAATGTCACTTGCCAAAGCTGCTATTCTTTTTCGTCAACATGGACTCAGGCACATGTGTGTTGTTCCAAAAAGCCAAGGGAGACCTCCAATTGTTGGGATTCTAACACGCCATGATCTTATGCCAGAGCATGTTTTGGGACTTTACCCCAATATTGTGCCTCACAAATGA 2409 0.4234 MGLIDICAVSWVPVTLAGKKMDKEGGANHGDYVHDIENEGPLDGNEEIGRYWSGLSDKNVSYSKPLLVKRANTTSQIAIVGANLCPIESLDYEIFDNEIFKQDWRSRKKVQILQYVMLKWGFALLIGLGTGLVGFFNSFAVENIAGFKLLMTTSLMSKHRYLEAFLAYTGVNICLAAAAAALCAFIAPAAAGSGIPEVKAYLNGVDAHSILAPSTLFVKILGSILGVSAGFVVGKEGPMVHTGACIASLLGQGGSRKYHLTCTWLRYFKNDRDRRDMITCGAAAGVAAAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAIVLRVAIQFCATGRCGLFGEGGLIMYDIGSANVTYNVGDILAVVILGIIAGILGSLYNYLVDKVVRTYSIINEKGPAYKISLVVTIALLTSCCYYFLPWIANCTPCPANVTVNCPSNDESGDYKSFQCPPGYYNDLASLFLNTNDDAIRNLFSPKITKEFHISSLFIYFATIYCLGIVTYGIAIPSGLFIPVILAGAGYGRLIGRLFEPITKLDRGLFALLGAASFLGGTMRMTVSICVILLELTNDLLLLPLVMLVLLVSKTVADNFNKGVYDQILKIKGLPYLEAHAEPYMRNLVTRDVLSGPLITFYGIEKVGNILHALKTTGHNGFPVIDEPPISDAPELCGLVLRSHLLVLLKEKSFSSERDLADQSIFQRISALDFGKAGSGKGIKLEDLDIQEEEMDMYVDLHPITNASPYTVIETMSLAKAAILFRQHGLRHMCVVPKSQGRPPIVGILTRHDLMPEHVLGLYPNIVPHK* 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0844 802 Gene3D - 610 792 IPR046342 -
Apr6g0844 802 SUPERFAMILY CBS-domain pair 613 787 IPR046342 -
Apr6g0844 802 CDD CBS_pair_voltage-gated_CLC_euk_bac 623 789 - -
Apr6g0844 802 SMART cbs_1 629 682 IPR000644 -
Apr6g0844 802 SMART cbs_1 740 791 IPR000644 -
Apr6g0844 802 Pfam CBS domain 740 787 IPR000644 -
Apr6g0844 802 PANTHER CHLORIDE CHANNEL PROTEIN CLC-C 55 802 - -
Apr6g0844 802 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 55 802 - -
Apr6g0844 802 SUPERFAMILY Clc chloride channel 97 612 IPR014743 -
Apr6g0844 802 PRINTS Chloride channel signature 188 205 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Apr6g0844 802 PRINTS Chloride channel signature 219 238 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Apr6g0844 802 PRINTS Chloride channel signature 283 302 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Apr6g0844 802 PRINTS Chloride channel signature 508 528 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Apr6g0844 802 PRINTS Chloride channel signature 540 556 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Apr6g0844 802 PRINTS Chloride channel signature 558 577 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Apr6g0844 802 PRINTS Chloride channel signature 596 610 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Apr6g0844 802 ProSiteProfiles CBS domain profile. 736 797 IPR000644 -
Apr6g0844 802 Pfam Voltage gated chloride channel 176 590 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Apr6g0844 802 CDD ClC_6_like 88 609 - -
Apr6g0844 802 Gene3D Clc chloride channel 111 609 - -
Apr6g0844 802 PRINTS Plant CLC chloride channel signature 93 101 IPR002251 GO:0005247|GO:0006821|GO:0016020
Apr6g0844 802 PRINTS Plant CLC chloride channel signature 304 312 IPR002251 GO:0005247|GO:0006821|GO:0016020
Apr6g0844 802 PRINTS Plant CLC chloride channel signature 318 328 IPR002251 GO:0005247|GO:0006821|GO:0016020
Apr6g0844 802 PRINTS Plant CLC chloride channel signature 336 343 IPR002251 GO:0005247|GO:0006821|GO:0016020
Apr6g0844 802 PRINTS Plant CLC chloride channel signature 460 476 IPR002251 GO:0005247|GO:0006821|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0844 Apr-Chr6 12890014 12897769 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0844 28 802 Ion Channels AT5G49890 72.786 0.0 1117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0844 K05016 - gmx:100809070 1315.06