Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0791 ATGCCGTCTCTTCTTCCTCTCAACGACGCCGTTCCGTGCGAGACCCCCAAAGACAAGTCAACGAAGAAGAAGGACAAAGGGAAGAAGAGCAAGTCCCCCAACGGTGCCGTTTGGGAACCAGAATCTCTGAGTCCGAAGAACAAGAGCAAGAAGCGCAAGAAGAGTTTTGATGAAGAGGAGCAGCAGAAGAGCGAGACTAGCTCGGAGCTCGTGGAGCCCACTGAGGAGGAAGCTTTGAAATCGGAATTGAATAGTAATAATAAGAAGAGGAATAAAAAAACGAAGCTTGCAGAAGAAGAAGAGGTTTCGAAGGAGGAGGATTCGAATGCGGTTTCCAAGTTTAGGATATCGGAACCGTTGAGGGTGAAGTTGAAGGAGAAGGGGATCGAAACACTGTTCCCCATTCAGGCCATGACCTTCGACACCATTCTCGATGGTTCCGATTTGGTTGGTCGCGCTCGCACTGGTCAGGGTAAAACTCTGGCCTTTGTGTTGCCCATATTGGAGTCTTTAACAAATGGTCCGGCCAAAGCTGCGAGAAAGACTGGCTATGGGAGGCCTCCGAGTGTACTTGTGCTTTTACCTACTAGGGAATTGGCCAGTCAGGTTCATACTGATTTTGAAGTTTATGGTTCGGCGATGGGATTGACTTCTTGCTGTTTATATGGTGGAACTCCATATCATACTCAAGACATTAAGCTCAAGAGAGGTGTTGATATTGTGATTGGAACACCAGGTCGTGTAAAGGATCATATCGAGAGGGAAAACCTTTACCTGGGCCATCTAAGGTTTCGTGTCCTTGATGAAGCAGATGAGATGCTGAGGATGGGCTTTGTTGAAGATGTTGAACTTATCCTAGGAAAGGTAGAAGATGTTGGTAAAGTTCAGACGCTTCTTTTTAGTGCCACTTTGCCAAACTGGGTTAAGCATATTTCTGCAAAGTTTCTGAAACCAGATAAGAAAACTGCTGATCTTGTTGGGAATGAGAAGATGAAGGCTAGCACCAATGTTAGGCATTTTGTTCTTCCATGTCACAGTTCTACCATGTCCCAAATTATACCTGACATTATTCGCTTTTATAGCAGTGGAGGCCGGACAATTGTATTTACTGAAAAGAAGGAGACTGCTTCTGAGTTTGCCGGGCTGTTGCCTGGAGCAAGGGCTCTCCATGGGGACATACCTCAATCACAACGGGAGGTCACGTTGGCAGCTTTTAGATCTGGGAAATTCATGACATTGGTAGCCACAAATGTGGCTGCAAGAGGTCTAGATATTAATGATGTTCAGTTGATTATCCAGTGTGAGCCTCCACGTGATGTAGAAGCCTATATTCATCGATCTGGACGCACAGGAAGAGCTGGTAATACTGGAGTTGCTGTAATGCTTTATGATCCCAGAAAGGGGTCAAAAATAGGTCAAATTGAAAGGGAATCGGGTGTGAAATTTGAACGCATAACTACTCCTCAGCCTGATGATATTGCCAAAGCTGCTGGTGTGGAAGCTGCTGCTGGAGTGATTAACCAAGTATCTGACAGTGTGATTCCTGCATTCAAGCCTGCTGCCGAGGAGCTTTTGAACAACTCCGGTTTATCAGCTGTTGAATTACTTGCAAAAGCTCTTGCTAAGGCTGCTGGTTTTACTGAGGTAAAGAAAAGATCAATTCTGACTTCCAGGGAGGATTATGTTACGTTACTTCTTCAAATTGGAAGACCTATGTTCTCTCCAATGTTTGCACTTGGAGTCCTGAAGAGATTCTTGCCCGAGGAGAAGGTTGAGTCAGTGCAGGGTCTGTCTTTCACTGCAGACGGAAATGGTGCTGTTTTTGATATACCAGCCAAAGATTCGGATTTATTTCTTAATGGTTCGCAGAATTCTGCTGGTGTAAGCCTAGAGTTGGTAACAACATTGCCACCTTTGAAAGAAAGGGACCCTCCGAGAGGGGCTAGATTTGGCGGTGGTCGTGGGTTTAACGATAGAAGTGGTGGGAACAGGTTTTCCTGTGGAAGAGGTGGTGGATTTTCTAGTCAGAGTAATAGGTTTTCAAATGGTTTTAAAGGTGGGAGAGGTAATGGAAACAGAGGCCGATATGGGGGGCAAAGGAGTTTCAGGGACTTCTGA 2118 0.4561 MPSLLPLNDAVPCETPKDKSTKKKDKGKKSKSPNGAVWEPESLSPKNKSKKRKKSFDEEEQQKSETSSELVEPTEEEALKSELNSNNKKRNKKTKLAEEEEVSKEEDSNAVSKFRISEPLRVKLKEKGIETLFPIQAMTFDTILDGSDLVGRARTGQGKTLAFVLPILESLTNGPAKAARKTGYGRPPSVLVLLPTRELASQVHTDFEVYGSAMGLTSCCLYGGTPYHTQDIKLKRGVDIVIGTPGRVKDHIERENLYLGHLRFRVLDEADEMLRMGFVEDVELILGKVEDVGKVQTLLFSATLPNWVKHISAKFLKPDKKTADLVGNEKMKASTNVRHFVLPCHSSTMSQIIPDIIRFYSSGGRTIVFTEKKETASEFAGLLPGARALHGDIPQSQREVTLAAFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKGSKIGQIERESGVKFERITTPQPDDIAKAAGVEAAAGVINQVSDSVIPAFKPAAEELLNNSGLSAVELLAKALAKAAGFTEVKKRSILTSREDYVTLLLQIGRPMFSPMFALGVLKRFLPEEKVESVQGLSFTADGNGAVFDIPAKDSDLFLNGSQNSAGVSLELVTTLPPLKERDPPRGARFGGGRGFNDRSGGNRFSCGRGGGFSSQSNRFSNGFKGGRGNGNRGRYGGQRSFRDF* 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0791 705 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 42 673 - -
Apr6g0791 705 SMART helicmild6 373 454 IPR001650 -
Apr6g0791 705 CDD SF2_C_DEAD 337 463 - -
Apr6g0791 705 CDD DEADc 124 317 - -
Apr6g0791 705 MobiDBLite consensus disorder prediction 638 705 - -
Apr6g0791 705 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 468 IPR027417 -
Apr6g0791 705 Gene3D - 333 562 IPR027417 -
Apr6g0791 705 Pfam DEAD/DEAH box helicase 133 310 IPR011545 GO:0003676|GO:0005524
Apr6g0791 705 Gene3D - 563 635 - -
Apr6g0791 705 Pfam Helicase conserved C-terminal domain 353 454 IPR001650 -
Apr6g0791 705 SMART ultradead3 128 340 IPR014001 -
Apr6g0791 705 MobiDBLite consensus disorder prediction 1 110 - -
Apr6g0791 705 CDD GUCT_RH7_like 552 637 - -
Apr6g0791 705 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 266 274 IPR000629 -
Apr6g0791 705 MobiDBLite consensus disorder prediction 669 685 - -
Apr6g0791 705 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 352 493 IPR001650 -
Apr6g0791 705 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 7 42 673 - -
Apr6g0791 705 Gene3D - 18 322 IPR027417 -
Apr6g0791 705 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 140 322 IPR014001 -
Apr6g0791 705 SUPERFAMILY RNA-binding domain, RBD 550 631 IPR035979 GO:0003676
Apr6g0791 705 MobiDBLite consensus disorder prediction 51 110 - -
Apr6g0791 705 Pfam GUCT (NUC152) domain 545 640 IPR012562 GO:0003723|GO:0004386|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0791 Apr-Chr6 12363035 12368486 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0791 116 460 Eukaryotic Initiation Factors Gene Family AT3G19760 30.447 4.43e-41 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0791 K16911 - cit:102628005 861.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0791 6 12363035 12368486 Apr6g0791 6 12363035 12368486 ECH