Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0789 ATGACTCCTTGTAAGATTTTCTCATTCTTTATCCTTCTTCTTATCTTCCTAAATTTTGCAACAATTGAGGCTCAAGATGACCCATTTTATCTGTACCAATATTGCTCTAGCAACAGAACCACAGCCAATTCTTCATTCCAATTAAACCTCAAGACCCTTCTTTCTTCCCTATCATCTAATGCTACAGGTGACACCCAATTCTACAACACCACATTCACTGGTGAAAACCCCTATGATTCAATCTATGGCATGTTCATGTGTAGGGGTGACATACCCTCTCAGCTTTGTCAACAATGTGTGGTAAATGCATCCCAAAGACTATCCTCAGAATGCTCCTTGTCCAAAGAAGCTGTGTTTTGGTATGATGAGTGCATGGTTTGGTATTCCACAACCTCTTTCTTTTCCACTGTGGCCACTACTCCTAGCTTTTCCTTGTTGAACCCTGCCAATGTCTCAAACCCACAAAGCTTCATGCATTTATTATATTTTACTATGAATCAAACTGCAAATGAAGCATCTGATTCTCCCATTGGTGACAAAAAGTTTGCCACAAAAGAAGCAAACGTGTCTAGATTTCAAACCCTTTATTGTCTTGCTCAATGTACTCCAGATTTATCACCTAGTGAATGTAAAACATGTCTCAATGGAGTGATAGAGGAACTTCCATCATGTTGTGAAGGAAGGATAGGAGGCAGAGTTCTATACCCTAGTTGTAATGTTAGGTATGAATTGTACCCTTTTTATCTCTCAACCCAATCATCACCAAAGCTAGCTCTTGCAACAAAACCTTCCCATGCAGATTCAAAATTCTCAGATGACCCTTTGTATCTTTCTCACAATTGCTCAAGAAACAAAGCCTTCACTGTCAATAATAGCACTTTCCAAATGCTCCTCCCCACTCTTCTCTCTTACCTGTCTTCCAATGCAACCAAAAGTGGCAAGAATTTTCATAAGGCTGATGTGGCTGACACAGTGTTTGGCCTCTACATGTGTAGGGGTGACCTTTCCTCTCAACTTTGTGCACAATGTATTCAGAATGCTACCCAAAGAATAACTTTAGAGTGTAGCTCTTCCCAAGAGGCTATAATTTGGTACAGTCACTGCTTGCTTCGCTTTTCATATTGGAATTTCTTCTCCAAAGTGGAGAAAAGTCCTATATTTTCGGAGTTAAATGTAACCAATGACTCCAACCCCAACCAGGAGGAGCAAAGCTTCTTCACTTATGTAATATCCAATACATTATCAAAAGTGGCAATTGAGGCAGGGGATAGTGATAAAAGATATGGCACAAAATCATTAAAACTTAATGAATTGCAAACCCTTTATACTCTTGCTCAATGTACCCAAGATTCGTCAGATGATGACTGCAACAGTTGTTTGGGATATTTGATGGGAACATCAATTCCATGGTCTAATTTGGGAAGTGTTGGTGGAAGAGTTCTATATCCGAGTTGCAATCTCAGGTTTGAATTGGACCAATTTTACAAGGATGTTGATGAAGCTATCATGCCAAGTAGTCCTCCTTCATCAGGAAAAGGAAATAGCAAGTCACGAACAATTATCTTGATAATTGTTGTGTCCATGGTCATTCTGGCGATACTTTTCTCTATTGGCTATTATTTGCTAAAGAGAAAAATAAGAAAGAGTTTTAAAACTATTCTCAGAGAAAATTTCGGTCATGAAAGTGCTACCTTAGAGCCACTGCAATTTGATTTGACTACAATTGAAGCAGCAACAAATAATTTTTCAGATGAGAATTACGTAGGGAAAGGTGGATTTGGAAAAGTTTACAAGGGTATTCTTCTTGATGGACGAGACATAGCAGTGAAAAGACTCTCAAGAACTTCTAAGCAAGGTGTAATTGAGTTCAAAAATGAAACTTTATTGATTGCTAAGCTTCAACACAGAAATTTAGTCGCCCTCATTGGTTTTTGCCTAGATGAACAAGAAAAAATACTTATCTATGAGTATGTGCCGAACAAGAGCCTTGATTACTTCTTATTTGATTCTCAACGACAAAAGATATTAAGTTGGTTTGAGCGTTACAAAATTATAAGAGGAATTGCTCAAGGAATTCTTTATTTACATGAATATTCTCGACTCAAAGTTATACATCGTGATCTAAAACCTAGTAACATTTTATTAGATGAAAATATGACTCCAAAAATCTCAGACTTTGGTCTTGCTAGAATTGTTGAAATAAATCAAGATCGAGGAAGTACAAACAGAATTGTTGGAACATTAGGTTATATGTCTCCAGAATATGCAATGCTTGGACAATTCTCAGAAAAATCAGATGTTTTTAGTTTTGGAGTCATGATTTTAGAAATTATCACAGGAAGAAAGAATGTCAATTCTTATGAATTACAACGCATTGGGGATACGCTCTTAAGTTATGTTTGGAGAGAATGGACACATCAATCACCAGTAAGCATATTGGACCCACATATCGAAAGAAGCTTTTCTGAAATTGAAGTTATCAAGTGCATTCAAATTGGTTTATTATGTGTTCAACAACATCCAAATGTTAGACCAACAATAACAACAATTGTTTCGTATCTCAACAATTACTCAATTGAATTGCCAACGCCAGAGGAACCTGCATTTTCCTTACAAGAAAAAATGAATTCAACAACTATTACACAAGAATCAAGTTCTAGTCAATCTATCAATAGTTCTAAAACATTGTCCATCAATGAGATGTCTCTTAGTGAATTTCTTCCACGGTAA 2730 0.3681 MTPCKIFSFFILLLIFLNFATIEAQDDPFYLYQYCSSNRTTANSSFQLNLKTLLSSLSSNATGDTQFYNTTFTGENPYDSIYGMFMCRGDIPSQLCQQCVVNASQRLSSECSLSKEAVFWYDECMVWYSTTSFFSTVATTPSFSLLNPANVSNPQSFMHLLYFTMNQTANEASDSPIGDKKFATKEANVSRFQTLYCLAQCTPDLSPSECKTCLNGVIEELPSCCEGRIGGRVLYPSCNVRYELYPFYLSTQSSPKLALATKPSHADSKFSDDPLYLSHNCSRNKAFTVNNSTFQMLLPTLLSYLSSNATKSGKNFHKADVADTVFGLYMCRGDLSSQLCAQCIQNATQRITLECSSSQEAIIWYSHCLLRFSYWNFFSKVEKSPIFSELNVTNDSNPNQEEQSFFTYVISNTLSKVAIEAGDSDKRYGTKSLKLNELQTLYTLAQCTQDSSDDDCNSCLGYLMGTSIPWSNLGSVGGRVLYPSCNLRFELDQFYKDVDEAIMPSSPPSSGKGNSKSRTIILIIVVSMVILAILFSIGYYLLKRKIRKSFKTILRENFGHESATLEPLQFDLTTIEAATNNFSDENYVGKGGFGKVYKGILLDGRDIAVKRLSRTSKQGVIEFKNETLLIAKLQHRNLVALIGFCLDEQEKILIYEYVPNKSLDYFLFDSQRQKILSWFERYKIIRGIAQGILYLHEYSRLKVIHRDLKPSNILLDENMTPKISDFGLARIVEINQDRGSTNRIVGTLGYMSPEYAMLGQFSEKSDVFSFGVMILEIITGRKNVNSYELQRIGDTLLSYVWREWTHQSPVSILDPHIERSFSEIEVIKCIQIGLLCVQQHPNVRPTITTIVSYLNNYSIELPTPEEPAFSLQEKMNSTTITQESSSSQSINSSKTLSINEMSLSEFLPR* 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0789 909 SMART serkin_6 582 854 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr6g0789 909 Pfam Protein kinase domain 583 851 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr6g0789 909 Gene3D Phosphorylase Kinase; domain 1 545 657 - -
Apr6g0789 909 ProSiteProfiles Protein kinase domain profile. 582 869 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr6g0789 909 ProSiteProfiles Gnk2-homologous domain profile. 275 377 IPR002902 -
Apr6g0789 909 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 510 897 - -
Apr6g0789 909 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 269 502 - -
Apr6g0789 909 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 16 255 - -
Apr6g0789 909 Pfam Salt stress response/antifungal 35 130 IPR002902 -
Apr6g0789 909 Pfam Salt stress response/antifungal 398 490 IPR002902 -
Apr6g0789 909 Pfam Salt stress response/antifungal 281 373 IPR002902 -
Apr6g0789 909 Pfam Salt stress response/antifungal 153 245 IPR002902 -
Apr6g0789 909 SUPERFAMILY Protein kinase-like (PK-like) 565 890 IPR011009 -
Apr6g0789 909 ProSiteProfiles Gnk2-homologous domain profile. 28 133 IPR002902 -
Apr6g0789 909 ProSiteProfiles Gnk2-homologous domain profile. 139 247 IPR002902 -
Apr6g0789 909 Gene3D - 139 247 IPR038408 -
Apr6g0789 909 Gene3D - 28 133 IPR038408 -
Apr6g0789 909 Gene3D - 274 377 IPR038408 -
Apr6g0789 909 Gene3D - 388 494 IPR038408 -
Apr6g0789 909 ProSiteProfiles Gnk2-homologous domain profile. 388 494 IPR002902 -
Apr6g0789 909 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 16 255 - -
Apr6g0789 909 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 269 502 - -
Apr6g0789 909 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 510 897 - -
Apr6g0789 909 ProSitePatterns Serine/Threonine protein kinases active-site signature. 703 715 IPR008271 GO:0004672|GO:0006468
Apr6g0789 909 CDD STKc_IRAK 588 856 - -
Apr6g0789 909 ProSitePatterns Protein kinases ATP-binding region signature. 588 610 IPR017441 GO:0005524
Apr6g0789 909 Gene3D Transferase(Phosphotransferase) domain 1 658 866 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0789 Apr-Chr6 12279774 12285087 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0789 271 909 Receptor kinase-like Gene Family AT4G05200 42.121 6.37e-174 519
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Apr6g0789 Pkinase 8.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0789 - - gmx:100806048 1258.82