Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0783 ATGTTTCCTTTACAACGAGGCAATGAGCTGGTCATTCAGTTTTCTAATAGCCCCCACCAACAGCAACACAAAATCTCCGAAGATCTGATTCTGGATGATTATGCTTCTCTGGATGTCAATTATTCCGATAAAAAATTCAGTAGTAGCCACCCGAAGAAATGTTTTAATGGGGCTGATAAGAATCATGGTAGTTCTAATGAACACAAGAAGAAGATGATCCATAGGGAGATTGAAAGGCAAAGGAGACAAGAAATGGCTACTTTTATTGCCTCTCTTAGATCCCTTCTCCCTCTTGAGTTCATCAAGGGAAAGCGTTCAATATCTGACCACATGAGCGAGGCAGTGAATTACATAAAGCACATGCAGCACAATATCAAAGAACTTGGTGCCAAAAGAGATAAACTGAAGAAACTCTCCAACTATTCCAAGATGGAAAATAACCATGAAACCTTGCATACATATGGAAACTTCACTGTCCATGAGAACAATGGTATTGTGGGAATTGAAATCACCAGCGGCTTTAGAAAAGAAAGTTTCAAACTTTCAAAGTTACTACAGTTACTGATTGAAGAAGGACTTGAAGTTGTTAGTTGCCTCTCAACTGAAGCCAATGGTAGATTGCTCCACAGTGTCCAGTGTGAGGTTAATGATTCCAACAGCGTAGATCTATCTGAGCTGAGAAGGAAAGTTGCTAATGTAATTCCAACACATAAATGTTTTGATTAA 726 0.3898 MFPLQRGNELVIQFSNSPHQQQHKISEDLILDDYASLDVNYSDKKFSSSHPKKCFNGADKNHGSSNEHKKKMIHREIERQRRQEMATFIASLRSLLPLEFIKGKRSISDHMSEAVNYIKHMQHNIKELGAKRDKLKKLSNYSKMENNHETLHTYGNFTVHENNGIVGIEITSGFRKESFKLSKLLQLLIEEGLEVVSCLSTEANGRLLHSVQCEVNDSNSVDLSELRRKVANVIPTHKCFD* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0783 241 Gene3D - 60 152 IPR036638 GO:0046983
Apr6g0783 241 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 69 121 IPR011598 GO:0046983
Apr6g0783 241 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 1 238 IPR015660 GO:0003700|GO:0006357
Apr6g0783 241 SMART finulus 75 127 IPR011598 GO:0046983
Apr6g0783 241 Pfam Helix-loop-helix DNA-binding domain 70 122 IPR011598 GO:0046983
Apr6g0783 241 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 1 238 - -
Apr6g0783 241 CDD bHLH_AtORG2_like 70 140 - -
Apr6g0783 241 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 66 137 IPR036638 GO:0046983
Apr6g0783 241 Coils Coil 118 138 - -
Apr6g0783 241 MobiDBLite consensus disorder prediction 50 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0783 Apr-Chr6 12221523 12222848 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0783 63 230 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G51780 44.318 3.03e-38 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr6g0783 HLH 6.5e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0783 - - gmx:100780888 365.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0783 6 12221523 12222848 Apr6g0783 6 12221523 12222848 ECH
Apr6g0783 6 12221523 12222848 Apr8g2257 8 33010771 33011802 PCT