Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0782 ATGGATGAAAACAAGAAATGGATGCATAAGGAAACAGAAAGACAAAGAAGGCAAGAGATGAGAAAATTCTGCACCACCCTTAGATCACTTCTTCCTTTAGAATATATTAAGGGAAAGCGTTCAACCTCTGATCATGTGTTTGAGGCTATGAATTACATCAACCACTTACAAAATAAGGTGAAGCAATTGCAAGCAAAGAGGGATGAGTTGAAGGTGTCTAATTTGACTACTATTTGTCCTGAGAATAAAAACTCAATTGCCCATCTTCCACCTTTTGCTATTGTTCATCCTTTCCCGGGTGGCCTTGAGATTATATGCAGTTACAGCTTCACAAAGTATGTGTTTCCTTTGTCAAAATTGCTGAAGATGCTGCTTAAAGAAGGGCTTAATGTGGTTAGCAGTACTTCCATCAAAAGGAATGGCAGATTCATCCACACTATACAATCAGAGGTACGTGTTAATTGA 465 0.3828 MDENKKWMHKETERQRRQEMRKFCTTLRSLLPLEYIKGKRSTSDHVFEAMNYINHLQNKVKQLQAKRDELKVSNLTTICPENKNSIAHLPPFAIVHPFPGGLEIICSYSFTKYVFPLSKLLKMLLKEGLNVVSSTSIKRNGRFIHTIQSEVRVN* 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0782 154 Coils Coil 53 73 - -
Apr6g0782 154 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 3 74 IPR036638 GO:0046983
Apr6g0782 154 CDD bHLH_AtORG2_like 5 73 - -
Apr6g0782 154 Pfam Helix-loop-helix DNA-binding domain 6 57 IPR011598 GO:0046983
Apr6g0782 154 Gene3D - 1 84 IPR036638 GO:0046983
Apr6g0782 154 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 4 56 IPR011598 GO:0046983
Apr6g0782 154 PANTHER TRANSCRIPTION FACTOR 1 151 - -
Apr6g0782 154 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 1 151 IPR015660 GO:0003700|GO:0006357
Apr6g0782 154 SMART finulus 10 62 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0782 Apr-Chr6 12209034 12209914 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0782 5 154 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G51790 41.290 2.43e-32 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr6g0782 HLH 1.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0782 - - aprc:113868134 313.538
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0782 6 12209034 12209914 Apr6g0782 6 12209034 12209914 ECH
Apr6g0782 6 12209034 12209914 Apr8g2256 8 32997109 32998368 PCT