Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0774 ATGGGAAGAGGGAGGGTGGTTCTTGAAAGAATAGAGAACAAGATCAATCGCCAAGTAACCTTCTCAAAGCGTAGAAGTGGATTGCTGAAGAAAGCTTTTGAGCTTTCTGTGCTGTGTGATGCTGAAGTGGCTCTTATAATATTTTCTAGCCGTGGCAAGCTTTTTCAGTACAGCAGCACTGATGTTAACAAAATCATTGAGAGGTATCGCCAATGTCGTTACAACAAATCACAGGCTGGCGATTCTTTTGAACATGAATCACAGAGCTACCATGAGTTCTTGAAATTAAGAGCGAAATATGAATCTCTGGAACGGACACAAAGGCATTTTCAAGGAGAAGAACTGGAGCCACTAAGCTTTAAAGAATTACAGAGCCTTGAGAAACAACTAGACATAACGCTCGCACTAGCTCGTCAGCAGCAAATGAAGAAGCTTATGGCACGAACTGATGAATTACGTGAAAAGGTGCACAACTTGGAGGAGCTTAACAATCAATTACAATCCAAGGAAAGAGATGGATTCTCAGACCTCGTTCCTGATAATAACAACAATATTCAATTACATGACACACAAGCTAACCATTTTGAATCTGAGACAACATTAAATACATGGTTTCGACATCATGAAGCTACTTCAAAAGGAAAAATAATTGACAGTGGAACAGAAGATAATCAAAGGAATCACCACAAAAACAATGGATGGTTGCAGTGA 711 0.3966 MGRGRVVLERIENKINRQVTFSKRRSGLLKKAFELSVLCDAEVALIIFSSRGKLFQYSSTDVNKIIERYRQCRYNKSQAGDSFEHESQSYHEFLKLRAKYESLERTQRHFQGEELEPLSFKELQSLEKQLDITLALARQQQMKKLMARTDELREKVHNLEELNNQLQSKERDGFSDLVPDNNNNIQLHDTQANHFESETTLNTWFRHHEATSKGKIIDSGTEDNQRNHHKNNGWLQ* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0774 236 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Apr6g0774 236 Coils Coil 142 172 - -
Apr6g0774 236 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Apr6g0774 236 MobiDBLite consensus disorder prediction 216 236 - -
Apr6g0774 236 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 235 - -
Apr6g0774 236 PANTHER MADS BOX PROTEIN 1 235 - -
Apr6g0774 236 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Apr6g0774 236 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Apr6g0774 236 Pfam K-box region 85 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Apr6g0774 236 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Apr6g0774 236 Gene3D - 13 99 IPR036879 GO:0003677|GO:0046983
Apr6g0774 236 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Apr6g0774 236 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Apr6g0774 236 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Apr6g0774 236 CDD MADS_MEF2_like 2 72 IPR033896 GO:0000977|GO:0045944
Apr6g0774 236 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0774 Apr-Chr6 12056547 12063619 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0774 1 208 MADS-box Gene Family AT2G45650 47.345 7.96e-58 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Apr6g0774 K-box 3.4e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0774 K09264 - gmx:100793681 373.244
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0774 6 12056547 12063619 Apr6g0774 6 12056547 12063619 ECH
Apr8g2248 8 32913376 32917293 Apr6g0774 6 12056547 12063619 PCT