Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0763 ATGGACGTGGATGGGGGCAACAAGCGCGTGTACAACCGTCTCGGTGCGGACGCGAAGCACCAGAAAGTTTGCTTCCATTGGCAGGCGGGCAAGTGCAATCGCTACCCGTGTCCCTATCTCCATAGCGAGTTGCCTTCTTCACACGCCAACGGCACCTCATCGAAGAGGCCTTACGAGAATTCGGGCTTTTCGGGCCCACGCCGGAGCCCAAATTTCAACACGTGGGGCCGCGGCGGCGGTCGTGGCGGCGGCGGAGGAGCAGGTGGTGGCAGAGGAGTGGTTGTAAAGGCTGATAAAGTTTGTAATTATTGGATTCAAGGGAATTGTAGTTTTGGAGAGAGGTGTAAGTTCCTTCACTCTTGGAGTGTTGGAGATGGTTTTTCTTTATTGACCCAGCTTGAAGGGCATCAGAAGGTTGTGAGTGGGATTGCCTTTCCCTCTGGTTCGGATAAGCTTTATACTGGAAGTACTGATGAGACTGTAAGGCTTTGGGACTGCCAGTCTGGAAAGTGTATGGCTGTGGTCACTCTAGGTGGAGAAGTAGGTTGTATGATCAGTGAAGGCCCCTGGGTTTTTGTTGGGATACCCAATTTTGTTAAGGCCTGGAACACACAAAATTCGATGGAGCTAAGTCTAAATGGCCCTGTTGGACAAGTTTATGCACTTGTTGTGATTAATGATATGCTCTTTGCTGGTACACAGGATGGATCTATATTGGCATGGAAATTTAATGTAGTTACCAACTGCTTTGAGCCAGCAGCATCACTTAAAGGTCATTCACGTGGTGTTGTTTCATTAGTTGTTGGAGCTAATAGACTTTATTCTGGCTCAATGGACAATACAATTAGAGTTTGGAACCTTGAAACCTTGCAGTGTTTACAGACACTAACTGATCACACGTCTGTTGTGATGTCTGTTCTCTGCTGGGACCAGTTCCTTCTTTCTTGTTCATTGGACAAAACAGTGAAGGTATGGTATGCTACTGAAAGTGGAAATTTGGAAGTGACATATACTCACAATGAAGAAAATGGTATAGTTACCCTTTGTGGGATGCATGATTCACAAGGCAAGCCCATTTTGCTCTGCTCTTGCAATGATAATACTGTGCGCCTCTATGATCTGCCAACATTTGCAGAGAGAGGTAAGATATTCACAAAACAAGAGGTACGAGCAATTCAGACGGGGCCTAATGGCATATTCTTCACCGGTGATGGTACTGGTCAAGTGAGAGTGTGGAATTGGATAGCGGAGCCAACTACTACCGGCCAATAA 1272 0.4686 MDVDGGNKRVYNRLGADAKHQKVCFHWQAGKCNRYPCPYLHSELPSSHANGTSSKRPYENSGFSGPRRSPNFNTWGRGGGRGGGGGAGGGRGVVVKADKVCNYWIQGNCSFGERCKFLHSWSVGDGFSLLTQLEGHQKVVSGIAFPSGSDKLYTGSTDETVRLWDCQSGKCMAVVTLGGEVGCMISEGPWVFVGIPNFVKAWNTQNSMELSLNGPVGQVYALVVINDMLFAGTQDGSILAWKFNVVTNCFEPAASLKGHSRGVVSLVVGANRLYSGSMDNTIRVWNLETLQCLQTLTDHTSVVMSVLCWDQFLLSCSLDKTVKVWYATESGNLEVTYTHNEENGIVTLCGMHDSQGKPILLCSCNDNTVRLYDLPTFAERGKIFTKQEVRAIQTGPNGIFFTGDGTGQVRVWNWIAEPTTTGQ* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0763 423 MobiDBLite consensus disorder prediction 46 88 - -
Apr6g0763 423 ProSiteProfiles Zinc finger C3H1-type profile. 96 122 IPR000571 GO:0046872
Apr6g0763 423 PANTHER - 1 420 IPR044715 -
Apr6g0763 423 Pfam Zinc finger domain 101 119 - -
Apr6g0763 423 MobiDBLite consensus disorder prediction 46 71 - -
Apr6g0763 423 ProSitePatterns Trp-Asp (WD) repeats signature. 273 287 IPR019775 -
Apr6g0763 423 SMART WD40_4 376 413 IPR001680 GO:0005515
Apr6g0763 423 SMART WD40_4 126 165 IPR001680 GO:0005515
Apr6g0763 423 SMART WD40_4 249 286 IPR001680 GO:0005515
Apr6g0763 423 SMART WD40_4 289 326 IPR001680 GO:0005515
Apr6g0763 423 SMART WD40_4 205 242 IPR001680 GO:0005515
Apr6g0763 423 SMART WD40_4 330 373 IPR001680 GO:0005515
Apr6g0763 423 ProSiteProfiles Zinc finger C3H1-type profile. 18 44 IPR000571 GO:0046872
Apr6g0763 423 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 256 289 - -
Apr6g0763 423 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 133 165 - -
Apr6g0763 423 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 420 - -
Apr6g0763 423 PRINTS G protein beta WD-40 repeat signature 152 166 IPR020472 -
Apr6g0763 423 PRINTS G protein beta WD-40 repeat signature 273 287 IPR020472 -
Apr6g0763 423 PRINTS G protein beta WD-40 repeat signature 313 327 IPR020472 -
Apr6g0763 423 ProSiteProfiles Trp-Asp (WD) repeats profile. 256 295 IPR001680 GO:0005515
Apr6g0763 423 ProSiteProfiles Trp-Asp (WD) repeats profile. 133 174 IPR001680 GO:0005515
Apr6g0763 423 SUPERFAMILY CCCH zinc finger 97 120 IPR036855 GO:0046872
Apr6g0763 423 SUPERFAMILY WD40 repeat-like 127 414 IPR036322 GO:0005515
Apr6g0763 423 Gene3D - 250 422 IPR015943 GO:0005515
Apr6g0763 423 SMART c3hfinal6 97 121 IPR000571 GO:0046872
Apr6g0763 423 SMART c3hfinal6 20 43 IPR000571 GO:0046872
Apr6g0763 423 Pfam WD domain, G-beta repeat 291 325 IPR001680 GO:0005515
Apr6g0763 423 Pfam WD domain, G-beta repeat 252 286 IPR001680 GO:0005515
Apr6g0763 423 Pfam WD domain, G-beta repeat 129 165 IPR001680 GO:0005515
Apr6g0763 423 Gene3D - 121 249 IPR015943 GO:0005515
Apr6g0763 423 Gene3D - 93 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0763 Apr-Chr6 11911216 11920967 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0763 121 354 Miscellaneous Gene Families AT5G08390 25.403 3.45e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Apr6g0763 WD40 5.5e-05 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0763 - - gmx:100792089 791.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0763 6 11911216 11920967 Apr6g0763 6 11911216 11920967 ECH