Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0760 ATGGCCTCTGCAACACTGTGTCACTGTCATCTCCCTCTTCCTCTTCCTCCTACTCGTTCTTATTCTTCTTCTCTTTGTATCAGAACTATGAAACCACCACTCTCTCTTTCACTCTCAACCCTTCTCATCCCCCATCTCCACGCGCGCTGCTTCTCTCCGCCACGCGCCTACGTAACCGGACCCGCAACTGACCCTAATTTATGCGACCCGGATCCGAAGCTCCTCGGGTTGGCTCCGGAGGAGACGAAGCCACGGAACGTGATTACGTGGAACCTCCTCTGCACACTTCTCATGAAGCACAAACTGCGCCTCGCTGTTTCGGTTGCGACGCTCTTCGCCTGCACCACCTGCACCCTATCCATGCCCATTTTTTCTGGGCGGTTTTTTGAAGTTCTTATTGGTGCTAGACCTGAGCCGTTATGGAGGTTGCTCAGTAAAATTGGAGTTCTGTATGCCCTGGAGCCACTTTTAACTGTTATTTTTGTTATAAACATGAACATAGTGTGGGAGAAAGTCATGTCAACACTAAGAGCTCAGATCTTTGGAAGAATATTGATTCAGAAGATTGAATTTTTTGACAAATACAAGGTTGGTGAACTCACTGGTTTGTTAACATCTGATTTGGATTCTCTTAAAAATATTGTTAGCGAGAATGTTTCAAGGGATCGTGGATTCAGGGCATTATCCGAGGTCATTGGAACAATATTCATACTTTTTACTTTATCCCCTCAACTGGCACCAATTCTGGGTATTCTGATGCTCGCAGTTTCCATTTCAATTGCTGTCTACAAGAGATCAACTTTGCCTGTTTTTAAAGCCCATGGGATGGCCCAAGCATCTATATCTGATTGTGTGACAGAAACATTTGCTGCTATTCGAACAGTAAGATCGTTTGGTGGGGAAAAACGTCAAATGTTTACATTTGCTAATCAGGTTCTATCTTTCCAATCAAGTGGGATAAAGCTTGGGACTTTCAAATCTGTAAATGAATCCTTGACTAGAGTTGCTGTTTATATTTCTTTAATAGCACTATATTGTCTTGGAGGGAGCAAAGTTAAGGCGGGTGACCTCTCCGTTGGAACTATGGCATCTTTTATTGGATATACTTTCACTTTAACATTCGCCGTTCAAGGACTGGTTAATACTTTTGGTGATCTTCGGGGAACTTTTGCTGCTGTTGAGAGGATCAACTCCGTTTTGTCTGGAGCTCAAGTTGATGATGCCCTTGCCTATGGCTTAGAAAGAGAACTGAAACAAAAAACTGTGGACGATGACAACTATAAACTGTTTTTCTCTAATACTTCTGTGGAGAATAACCAAAGAAATTATTTGCATTACATGTCAGCACTAAAAACATCAAGCAATTTATTTAGCTTAGCTTGGTCTGGAGATGTTTGTCTTGAAGATGTGTATTTCTCTTATCCTTTAAGGCCAGATGTGGAAATCTTACGCGGCTTAAATTTAAGACTAAAATGTGGAACTGTAACTGCGTTGGTGGGTCCTAGTGGTGCTGGAAAAAGTACGGTAGTACAGTTATTGTCTCGTTTTTATGAGCCAACAAGAGGGTGTATAACAGTTGCAGGAGAGGATGTCCGAACATTTGACAAAAGTGAATGGGCCCGGGTTTTCTCTATTGTAAATCAAGAGCCTGTTCTGTTTTCTGTGTCTGTTGGAGAAAATATTGCATATGGACTTCCAGATGAAAATGTTTCAAGAGAAGATGTGATTAAGGCAGCGAAAGCTGCAAATGCTCACGACTTTATAATTTCACTTCCACAGGGGTATGATACACTTGTTGGTGAGCGTGGTGGCCTACTGAGTGGAGGACAGAGACAGAGAATTGCTATTGCCCGAGCTCTCCTAAAGAATGCTCCCATCCTTATACTTGATGAGGCTACCAGTGCCCTGGATGCAGTCAGTGAGCGCCTGGTCCAGGGTGCTCTCAACCATTTGATGAAGGGAAGGACAACATTAGTAATAGCTCATCGATTAAGCACAGTCCAAAATGCCTATCAAATTGCAGTCTGTTCTGAGGGGAGGATTGCAGAACTGGGCACCCATTTTGAGCTATTGGCTAAGAAGGGCCAATATGCATCGCTGGTTGGTACTCAAAGGCTTGCATTTGAATAA 2130 0.4319 MASATLCHCHLPLPLPPTRSYSSSLCIRTMKPPLSLSLSTLLIPHLHARCFSPPRAYVTGPATDPNLCDPDPKLLGLAPEETKPRNVITWNLLCTLLMKHKLRLAVSVATLFACTTCTLSMPIFSGRFFEVLIGARPEPLWRLLSKIGVLYALEPLLTVIFVINMNIVWEKVMSTLRAQIFGRILIQKIEFFDKYKVGELTGLLTSDLDSLKNIVSENVSRDRGFRALSEVIGTIFILFTLSPQLAPILGILMLAVSISIAVYKRSTLPVFKAHGMAQASISDCVTETFAAIRTVRSFGGEKRQMFTFANQVLSFQSSGIKLGTFKSVNESLTRVAVYISLIALYCLGGSKVKAGDLSVGTMASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSVLSGAQVDDALAYGLERELKQKTVDDDNYKLFFSNTSVENNQRNYLHYMSALKTSSNLFSLAWSGDVCLEDVYFSYPLRPDVEILRGLNLRLKCGTVTALVGPSGAGKSTVVQLLSRFYEPTRGCITVAGEDVRTFDKSEWARVFSIVNQEPVLFSVSVGENIAYGLPDENVSREDVIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQGALNHLMKGRTTLVIAHRLSTVQNAYQIAVCSEGRIAELGTHFELLAKKGQYASLVGTQRLAFE* 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0760 709 CDD ABC_6TM_TAP_ABCB8_10_like 111 396 - -
Apr6g0760 709 ProSitePatterns ABC transporters family signature. 606 620 IPR017871 GO:0005524
Apr6g0760 709 Gene3D ABC transporter type 1, transmembrane domain 77 402 IPR036640 GO:0005524|GO:0016021
Apr6g0760 709 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 105 388 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Apr6g0760 709 CDD ABC_MTABC3_MDL1_MDL2 467 704 - -
Apr6g0760 709 SUPERFAMILY ABC transporter transmembrane region 93 396 IPR036640 GO:0005524|GO:0016021
Apr6g0760 709 Pfam ABC transporter 483 634 IPR003439 GO:0005524
Apr6g0760 709 PANTHER ABC TRANSPORTER B FAMILY MEMBER 28 46 707 - -
Apr6g0760 709 Gene3D - 463 706 IPR027417 -
Apr6g0760 709 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 46 707 IPR039421 -
Apr6g0760 709 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 465 703 IPR003439 GO:0005524
Apr6g0760 709 Pfam ABC transporter transmembrane region 106 375 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Apr6g0760 709 SMART AAA_5 492 666 IPR003593 -
Apr6g0760 709 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 457 704 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0760 Apr-Chr6 11856408 11866869 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0760 120 709 Calmodulin-binding Proteins AT2G36910 33.659 2.45e-74 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0760 K05657 - gmx:100791034 1193.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0760 6 11856408 11866869 Apr6g0760 6 11856408 11866869 ECH