Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0758 ATGTTTACTTCGAATAATTTCTCCCATGATCCACGTTCAGTTTTTTTGGACACGTCATCACTAGCATTTTCCAAGGAGCTGCGGCTGGCGGTGCGCCACCCGAAGAAGCGAGCGGGGAGGAAGAAGTTCCGGGAGACACGCCACCCGGTGTACCGGGGCGTGAGGAGGAGGAGCTCAGACAAGTGGGTGTGTGAGGTGAGAGAGCCTAAAAAGAAGACTAGAATTTGGTTAGGGACTTTTCCCACGGCGGAGATGGCGGCGCGGGCCCACGATGTGGCAGCAATGGCCCTACGGGGCAGGTATGCTTATCTAAATTTTGCCGACTCGGCATGGCGGTTGCCGATTCCCGCCACCGCCGAGGCTAAAGATATCCAAAAGGCAGCCGCACAGGCTGCCGAAACTTTTAGGCCAAGTCAGACTTTAAACAATGGTGACATTAAGAAAGAGAGTGTTGAGGTGGCGGTGACGAAGGCAGGGGAGGGTGTGTTTTATATGGAGGAAGAAGAAGAGGAAGTGTTGGAGATGCCTGAGTTGCTTAGGAATATGGTGCTTATGTCCCCTACTCATTGCTTAGGGTTTGAGTATGAAGATGCTGACTTGGATGCTCAAGATGCTGAGGTGTCACTATGGAGTTTTTCAATTTAG 645 0.5178 MFTSNNFSHDPRSVFLDTSSLAFSKELRLAVRHPKKRAGRKKFRETRHPVYRGVRRRSSDKWVCEVREPKKKTRIWLGTFPTAEMAARAHDVAAMALRGRYAYLNFADSAWRLPIPATAEAKDIQKAAAQAAETFRPSQTLNNGDIKKESVEVAVTKAGEGVFYMEEEEEEVLEMPELLRNMVLMSPTHCLGFEYEDADLDAQDAEVSLWSFSI* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0758 214 Pfam AP2 domain 49 99 IPR001471 GO:0003700|GO:0006355
Apr6g0758 214 PRINTS Ethylene responsive element binding protein signature 51 62 IPR001471 GO:0003700|GO:0006355
Apr6g0758 214 PRINTS Ethylene responsive element binding protein signature 73 89 IPR001471 GO:0003700|GO:0006355
Apr6g0758 214 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 23 214 IPR045277 GO:0003700
Apr6g0758 214 SMART rav1_2 50 113 IPR001471 GO:0003700|GO:0006355
Apr6g0758 214 SUPERFAMILY DNA-binding domain 50 109 IPR016177 GO:0003677
Apr6g0758 214 Gene3D AP2/ERF domain 50 108 IPR036955 GO:0003700|GO:0006355
Apr6g0758 214 ProSiteProfiles AP2/ERF domain profile. 50 107 IPR001471 GO:0003700|GO:0006355
Apr6g0758 214 CDD AP2 51 109 IPR001471 GO:0003700|GO:0006355
Apr6g0758 214 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 23 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0758 Apr-Chr6 11835111 11836707 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0758 10 212 AP2-EREBP Transcription Factor Family AT5G51990 53.023 5.44e-64 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Apr6g0758 AP2 1.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0758 - K09286 gmx:547622 303.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0758 6 11835111 11836707 Apr6g0758 6 11835111 11836707 ECH
Apr6g0758 6 11835111 11836707 Apr8g2234 8 32817544 32818947 PCT