Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0732 ATGGCTCCGCCACCGCCGGTGGAACACAACACCGACTCCACCACAGCTGCAGACTCTCAGAGATCCATTCCCACACCGTTTCTCACCAAAACATACCAACTCGTAGACGACCAATCCATCGACGACGTTATTTCATGGAACGAGGACGGATCCACCTTCATCGTGTGGAACCCTACCGTCTTTGCCAAAGACCTGCTTCCTAAATATTTCAAACACAACAACTTCTCCAGCTTCGTTCGTCAACTCAACACTTACGGATTTAGAAAAGTTGTGCCCGATCGGTGGGAATTCTCGAACGAATGTTTCCGCAGAGGGGAGAAACGGCTTCTGTGCGAAATTCAGCGGAGGAAGATCTCGTTGTCTCCCTCGCCATCTCCGTCGCCGACGGCGGCAGCTATGGCGTCTGCAATGGTTGCGGTTCCTACGCCGATGCCGTTGACTACGATACCGTCGGCGATGCCGATCATATCGCCGTCGAACTCCGGTGAGGAACAGGTTATATCGTCGAACTCGTCGCCGTCGCGAGCGCCGGCTGAGCTTCTCGACGAGAACGAGAGGTTGAGGAAGGAGAACCTTCAGCTAACCAAAGAGCTTGCTGAAATGAGATCGTTATGCAACAATATATATACACTCATGTCGAATTATGCGAACGCCAACAACCAAACGGACGGAGGCAGCGGCGGGGCGCAAGGGAGCAGAGAGTCCGGCATGACGGCGGTAAAACCTCTTGAATTGATGCCGGTGAAACGGAGCTCCGGCGAGGGGGCGGCAGAGATGGCGCCGGAGGAGATGAATCCGAAGCTGTTTGGGGTGGCCATTGGAGCAAAGCGAGCGAGAGAGGGAGGAGGAAGTGGTAGTTGTGGTGGTGGTGGGGGTGCAGGAGGAGAGGAGGATACGCTGTTGCGACTGCATCATTCGGGTTCTGTGGATGTGAAATCAGAGCCGTTAGATTGCCAGAACCATCACGACAATCATCAAACGCCGTGGTTGAATCAGTGCAACAGAACCAATCAGAGGGTGTGCAACTGA 1029 0.5423 MAPPPPVEHNTDSTTAADSQRSIPTPFLTKTYQLVDDQSIDDVISWNEDGSTFIVWNPTVFAKDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFSNECFRRGEKRLLCEIQRRKISLSPSPSPSPTAAAMASAMVAVPTPMPLTTIPSAMPIISPSNSGEEQVISSNSSPSRAPAELLDENERLRKENLQLTKELAEMRSLCNNIYTLMSNYANANNQTDGGSGGAQGSRESGMTAVKPLELMPVKRSSGEGAAEMAPEEMNPKLFGVAIGAKRAREGGGSGSCGGGGGAGGEEDTLLRLHHSGSVDVKSEPLDCQNHHDNHQTPWLNQCNRTNQRVCN* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0732 342 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-2A 10 327 - -
Apr6g0732 342 ProSitePatterns HSF-type DNA-binding domain signature. 66 90 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr6g0732 342 MobiDBLite consensus disorder prediction 1 20 - -
Apr6g0732 342 Coils Coil 184 204 - -
Apr6g0732 342 Pfam HSF-type DNA-binding 27 116 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr6g0732 342 SUPERFAMILY "Winged helix" DNA-binding domain 24 116 IPR036390 -
Apr6g0732 342 Gene3D - 19 117 IPR036388 -
Apr6g0732 342 MobiDBLite consensus disorder prediction 158 177 - -
Apr6g0732 342 MobiDBLite consensus disorder prediction 158 182 - -
Apr6g0732 342 PRINTS Heat shock factor (HSF) domain signature 27 50 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr6g0732 342 PRINTS Heat shock factor (HSF) domain signature 65 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr6g0732 342 PRINTS Heat shock factor (HSF) domain signature 78 90 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr6g0732 342 SMART hsfneu3 23 116 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr6g0732 342 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 10 327 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0732 Apr-Chr6 11390614 11392378 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0732 5 342 HSF AT5G62020 48.732 7.15e-99 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Apr6g0732 HSF_DNA-bind 8.9e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0732 K09419 - gmx:100812267 513.072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0732 6 11390614 11392378 Apr6g0732 6 11390614 11392378 ECH
Apr6g0732 6 11390614 11392378 Apr8g2215 8 32608413 32609616 PCT