Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0725 ATGGTTTTCAACGAAACCACCACCACCAACTACAACAACACACCACTTCCCATGTTACTCGTTGTCTTCGTTTTCGCCTTCTTCATCACTGGCTTCTGCACCATCTGCATTCGCTACTGCTCCGAACAAGAAACGCTTCCTCAGAACCCAACTGGGACCCACCATGGAATCGACCCGCACGTGCTCGCCACGTTTCCCATCATGCCTTATTCCGCAGTGAAGCATCTCAAAACGGGTCAGAACGCAGCGTTGCAGTGCGCGGTGTGTTTGGGGGAATTCACAGACGCTGACGCGCTTCGCTTGTTGCCCAAGTGTAGTCACGTGTTCCACCCAGACTGCATCGACGCGTGGCTCGCTTCGCACGTGACCTGCCCCATCTGTCGGGCAAAGCTGAAGCCGGAAACCGATGATGTGAAGGTGGAAATTGAAGGGGAAGCACGAGCGCGCCATGTGTTTGATGAAAGTTCTGTGAGAAGGGTTGAAGTTGATAGTGGTGGAAACGAAAGTGGGGTGCGTGGGAATGTTGATGGATGTGTTGGGAAGGGTAATGGGTGTTCAAAGGAGAAAGCTTCTGGGGTGCTTTTGAGGTCACATTCAACGGGTCATTCATTTGTTGAAGAAGGGAAGGGTTTGGAGAGATTCACTCTGAGGTTACCTGAGGAAGTGATGAAGCAGATTATGGATGATTGTAAACGTGGAAGTGTGATGATGATGAAGCGTTCTGCCAGTTACGACGTCGTTTTGAGGAGTGGAGAAAGGGGTGAAGGTAGCACTAGTAAGGGAAAGAATAATAGTAATGGTAGGTGGGTTTTGTCCATGACCCCTCCCTTTGTTTCTGGTGGTTGGGGTTCTCTGAATGTGTCCTCTGGGATTCTGAGGATTTGGGGGTTGGGTTCTGTTGTACAGTGTGTTGGAGAAATTGGAATGATTGAATTGATGATGTGTTATTGTTTGGCGCAATCCACGCAAACATGGGAGAATTCTGCCTTTACAGTCTCAAACACTATTGTAAAAATTGGATCAAATTGGCAAGTTGAGCCAGATCCGGATAAGAATACAGCTTTGACACTCCAATTGTCTAATAAACAGAAAAGTGATCCCACGAGACAAAGATCTGCAAAGAGCTCCTCATTTGATATCAACACCAAGAAGTGA 1155 0.4797 MVFNETTTTNYNNTPLPMLLVVFVFAFFITGFCTICIRYCSEQETLPQNPTGTHHGIDPHVLATFPIMPYSAVKHLKTGQNAALQCAVCLGEFTDADALRLLPKCSHVFHPDCIDAWLASHVTCPICRAKLKPETDDVKVEIEGEARARHVFDESSVRRVEVDSGGNESGVRGNVDGCVGKGNGCSKEKASGVLLRSHSTGHSFVEEGKGLERFTLRLPEEVMKQIMDDCKRGSVMMMKRSASYDVVLRSGERGEGSTSKGKNNSNGRWVLSMTPPFVSGGWGSLNVSSGILRIWGLGSVVQCVGEIGMIELMMCYCLAQSTQTWENSAFTVSNTIVKIGSNWQVEPDPDKNTALTLQLSNKQKSDPTRQRSAKSSSFDINTKK* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0725 384 ProSiteProfiles Zinc finger RING-type profile. 86 128 IPR001841 -
Apr6g0725 384 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL31-LIKE 10 243 - -
Apr6g0725 384 SUPERFAMILY RING/U-box 79 136 - -
Apr6g0725 384 MobiDBLite consensus disorder prediction 359 384 - -
Apr6g0725 384 Pfam Ring finger domain 85 128 IPR001841 -
Apr6g0725 384 SMART ring_2 86 127 IPR001841 -
Apr6g0725 384 PANTHER RING FINGER DOMAIN-CONTAINING 10 243 - -
Apr6g0725 384 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 136 IPR013083 -
Apr6g0725 384 CDD RING-H2_PA-TM-RING 85 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0725 Apr-Chr6 11279549 11281563 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0725 16 300 Rapid Response to Elicitors AT3G05200 36.486 2.00e-47 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0725 K10664 - gmx:102665105 280.411