Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0724 ATGCCTGAATTCCAACCCAAACACTTCCACTCCACTCTCTTCACATGGGTTTACCTCCTTTTCTTACGCCACCATGTTGTTGATGCACAATCATCCATGGAGCCAGTACCCACATACATCAACCACCATAATTGGGAACCTTCTGTTGCAATCACTGTTGGAGCCATCATTTGTGCTCTTCTCTTCATGGGCATCATCTCAATCTACATAAGAAGGTGTGCAGAGTCACACATCATCATCACCCAGGCCACCACAAACACCACACACTTCCCATGTTCATGTTCACAAGGCATCAACAAGGAACTCCTCAACACCTTCCCAACCTTCTTCTACTCCAACATCAAGGACCTCAAGAAGGGAAAAGAAGCACTTGAATGTGCTGTGTGCTTAACTGATTTCAAAGAGAAAGACACCCTAAGGCTGCTCCCTAAATGCAACCACGTGTTTCACCCTCAATGCATTGATTCATGGCTAGCTTCACACGTGACATGCCCAGTTTGTCGTGCGAATCTGAACCAAGATTCATGCCATGTTGCCATAACTGTCCCTACCCAGTTGAGCACTGATGATGAAAGTGGAACCAGAACTGAAACTGGTGAAGAAAACCAACAAGAGCCAAACCCAAACATAAACACCAACCCAAACCCAAATCCAAATCCAAACCAAAACCAAAAGCAAAACCAAGGTGAGGTTAATGGTAGTAGTGATGATGGGGGTGCATCAAAATGGAACCTTTTGAGGTCAAATTCAACTGGGCATTCACTTGTTGAGCCAGGGAAGTGTGTGGAGAGGTACACGTTGAGGTTACCAGAAGATGTGAGGACGTACATTCTGGTGAACCATGGATCAACTGTTCAACGTTCTTTGAGTTACCACACCAACAACAACAACAACGTGGTTAAGGGGATGTGTTGGAGTGATAGTGAAGAGAGTAACGGAGGGAAGAGGATCAATGGTGAGGTGAGGGTGGAAAGGTGGGTGCTTTGCACACCGCCATTTGTTGGGCGCCATGGTTGA 1017 0.4612 MPEFQPKHFHSTLFTWVYLLFLRHHVVDAQSSMEPVPTYINHHNWEPSVAITVGAIICALLFMGIISIYIRRCAESHIIITQATTNTTHFPCSCSQGINKELLNTFPTFFYSNIKDLKKGKEALECAVCLTDFKEKDTLRLLPKCNHVFHPQCIDSWLASHVTCPVCRANLNQDSCHVAITVPTQLSTDDESGTRTETGEENQQEPNPNINTNPNPNPNPNQNQKQNQGEVNGSSDDGGASKWNLLRSNSTGHSLVEPGKCVERYTLRLPEDVRTYILVNHGSTVQRSLSYHTNNNNNVVKGMCWSDSEESNGGKRINGEVRVERWVLCTPPFVGRHG* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0724 338 MobiDBLite consensus disorder prediction 199 246 - -
Apr6g0724 338 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 175 IPR013083 -
Apr6g0724 338 CDD RING-H2_EL5_like 125 168 - -
Apr6g0724 338 ProSiteProfiles Zinc finger RING-type profile. 126 168 IPR001841 -
Apr6g0724 338 MobiDBLite consensus disorder prediction 187 246 - -
Apr6g0724 338 Pfam Ring finger domain 125 168 IPR001841 -
Apr6g0724 338 PANTHER RING FINGER DOMAIN-CONTAINING 226 300 - -
Apr6g0724 338 PANTHER RING FINGER DOMAIN-CONTAINING 7 213 - -
Apr6g0724 338 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 7 213 - -
Apr6g0724 338 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 226 300 - -
Apr6g0724 338 SUPERFAMILY RING/U-box 107 174 - -
Apr6g0724 338 SMART ring_2 126 167 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0724 Apr-Chr6 11269796 11271481 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0724 17 336 Rapid Response to Elicitors AT3G05200 37.092 2.25e-57 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0724 K10664 - gmx:100782532 401.364