Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0720 ATGGGTGTGAAGAATTTGTGGGATATACTCGAATCATGCAAGAAAACGGTTCCTCTTCACCATCTTCAGAACAAGAGGGTGTGCGTGGATCTCTCGTGCTGGATGGTGCAGCTTCACAACGTTAGCAAGTCACACGCATGTGTCAAGGAGAAAGTGTACCTCAGAGGACTCTTTCACCGACTTAGAGCACTCATTGCACTCAATTGTACACTGGTTTTCGTCGCAGATGGATCAATTCCTGCCATCAAATTATCAACTTATAGGCGTCGCTTAAACATTGGAAAGGAGGTTACACAGATCGAAACTAACTTACAGAAAGTGACTTCATTACGGAGAAACATGGGGTCTGAGTTTTCTTGCATGATTAAAGAGGCTAAAGCGTTGGGGATGGCCCTTGGCATTTCTTGTTTGAATGGGATTGAAGAAGCTGAAGCCCAGTGTGCTTTGTTGAACTTTGAATCATTATGTGATGGATGTTTCAGTTCAGATTCAGATATATTTCTTTTTGGTGCAAGGACAGTGTATAGGGATATCTGCCTTGGGGAAGGTGGATATGTTGTTTGTTATGAGATGCCAGATATTGAAAGAAAACTTGGATTTGGAAGGGACTCATTGATTGCTCTCTCCCTGCTTCTTGGCAGTGATTATTATCAAGGAGTTCATGGTCTGGGTCCAGAGTCAGCTTGTCAGCTAGTCAAATCAATCGGGGACAAATTTGTTCTTAAAAAATTTGCTTCTGAAGGACTTGAGTGGGTTAAAAAAAGAAAAGGAGGTGAGAATGAGTTACTGAGGGATGGTAACATTTTACAAGTGATTAATGCTTATATGAAGCCAAAATGCCACCCAGCAGATTCAGATATTGTGCACAAGGCTCTTGCTCACTATCCATTTCAACGTACTAAACTCCAGCAGATATGTGCTGAATTCTTTGAGTGGCCTTCAGAGAAAACAGATGGGTATATCCTTCCAAGTATAGCTGAAAGAGATTTACGGCGATTTGCCAACTTGCGTTTAACTTCATCTCAAGTTGGATTGGATCTTCCTTTACATGAGATCCCTGTGAAGTGTCCTGTGTCAGAAGTCATTAAGAGCCGAAGAGTTCAAGGGAGAGAATGCTATGAGGTTTCTTGGGAAGGAATGGATGGACTTGAAACTTCAATAGTACCTGCAGATCTTTTAGAAAGTGCCTGTCCCGAGAAGATTTTGGGGTTTGAGAATAGAAAAGCTCAACAGAAGAAACAAAATATTCAGAAAAGAAGACCAAAGAAAAAGGAAACTGTGTCATCTGTGGCTGAGCTTGATCTACTCCAGAATTTGTTGCTGGACAATAATTTGAGAGACCAAGGCAAACTTAATGCCTCTGATTCTTCAGGAATGATCTCAGAGATTACAACTGCTATGGCTGAAGTTAATCTGAATACCAAAGACTTGTTGCCCCCATCACATGACCCACAACATAATGGGTTGATTGAGAACATTAGCAACATCTACGAGACTGTTTCCAGTGTAGATAAAAATGAGGTCATAGATCTTCTGAGCCCTTCCCCTCCTAAGAAACCCCTTACTTTCTCAAAATGTCACCAACCAAGTGACAAGCATATTGAAGTGATTAATTTGAGTGATTCAGAAAATGACATGTCCCCTGAACATAAGCAAAAAGCAAAGGAGCTGAGATTGTTCTTAGCTAGTATTAGGAATGAAATCCATTGA 1710 0.4099 MGVKNLWDILESCKKTVPLHHLQNKRVCVDLSCWMVQLHNVSKSHACVKEKVYLRGLFHRLRALIALNCTLVFVADGSIPAIKLSTYRRRLNIGKEVTQIETNLQKVTSLRRNMGSEFSCMIKEAKALGMALGISCLNGIEEAEAQCALLNFESLCDGCFSSDSDIFLFGARTVYRDICLGEGGYVVCYEMPDIERKLGFGRDSLIALSLLLGSDYYQGVHGLGPESACQLVKSIGDKFVLKKFASEGLEWVKKRKGGENELLRDGNILQVINAYMKPKCHPADSDIVHKALAHYPFQRTKLQQICAEFFEWPSEKTDGYILPSIAERDLRRFANLRLTSSQVGLDLPLHEIPVKCPVSEVIKSRRVQGRECYEVSWEGMDGLETSIVPADLLESACPEKILGFENRKAQQKKQNIQKRRPKKKETVSSVAELDLLQNLLLDNNLRDQGKLNASDSSGMISEITTAMAEVNLNTKDLLPPSHDPQHNGLIENISNIYETVSSVDKNEVIDLLSPSPPKKPLTFSKCHQPSDKHIEVINLSDSENDMSPEHKQKAKELRLFLASIRNEIH* 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0720 569 CDD H3TH_XPG-like 203 246 - -
Apr6g0720 569 PANTHER FLAP ENDONUCLEASE GEN HOMOLOG 1 1 462 - -
Apr6g0720 569 CDD PIN_GEN1 2 198 - -
Apr6g0720 569 Pfam XPG N-terminal domain 1 93 IPR006085 GO:0004518
Apr6g0720 569 ProSiteProfiles Chromo and chromo shadow domain profile. 356 416 IPR000953 -
Apr6g0720 569 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 462 IPR006084 -
Apr6g0720 569 SMART xpgineu 130 200 IPR006086 GO:0004518
Apr6g0720 569 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 200 336 IPR036279 -
Apr6g0720 569 SUPERFAMILY Chromo domain-like 358 412 IPR016197 -
Apr6g0720 569 SMART xpgn3 1 97 IPR006085 GO:0004518
Apr6g0720 569 Gene3D - 201 258 - -
Apr6g0720 569 Gene3D - 2 199 - -
Apr6g0720 569 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Apr6g0720 569 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 71 90 IPR006084 -
Apr6g0720 569 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 129 146 IPR006084 -
Apr6g0720 569 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 150 170 IPR006084 -
Apr6g0720 569 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 205 220 IPR006084 -
Apr6g0720 569 Pfam XPG I-region 133 215 IPR006086 GO:0004518
Apr6g0720 569 SUPERFAMILY PIN domain-like 3 215 IPR029060 -
Apr6g0720 569 Gene3D - 355 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0720 Apr-Chr6 11198741 11204938 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0720 1 236 Core DNA Replication Machinery Family AT5G26680 25.882 1.91e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0720 K15338 - gmx:100806919 976.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0720 6 11198741 11204938 Apr6g0720 6 11198741 11204938 ECH