Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0719 ATGGGGTGTCACCAATTAGAAAAATCAAAACCAAAATACAGAAAGGGTTTATGGTCACCTGAAGAAGATAATAAGCTCAGAAACCATATTCTTAAGCATGGTCATGGCTGTTGGAGCTCTGTTCCAATTAAAGCAGGCTTGCAGAGGAATGGAAAGAGCTGCAGACTAAGGTGGATCAATTATCTGAGGCCAGGATTGAAGAGAGGGGTGTTCAGCAAACAGGAGGAAGACACAATCATGACCCTTCACCACATGTTAGGAAACAAGTGGTCTCAAATAGCACAGCATTTGCCCGGAAGGACTGACAATGAGATAAAAAATTATTGGCATTCATATTTGAAAAAGAAAGTGGTCAAAGCTAAAGAAATTGAATCTGATAAACAAGTTCACTATGCTAGCTCAAGTTCAGATACAATGGATAATTCGTTCTCTCCACAGAAATTTGCAACTCAAGATCCTAATTATGGATTGTTTGAAAACATGGACAAATCAACACCACCCTTTGATCATTCTTTTTCACAGAACTACAACTTTTCCATGGAGACTAGTCAAAGCTCTTTACCAAAACTTTTATTTGCTGAGTGGCTTTCAGTGGATCATGTAAATGGTGGAAGCTCAGTAAATTCTGATGATTCTTTGGTTTTGGGAAATGAATTCGATCAGAATTCAACTTTCCAAGATGCTATAATGCATATGTCAGAAGGACACTTTGGTGAAGGGTATCATCATAATAGTCTAATTCAAAGTTCAGCCACTGAGGTGTACAATTCACAGCTTAAGTTATCAAATCAAGTGGATGGAAATGATTTCGACCATTGTGTAGCTGGGGTTGATTTCTGTAGCAATTTCAGCCTCACCAATGATACAATGTATGTATGA 879 0.3811 MGCHQLEKSKPKYRKGLWSPEEDNKLRNHILKHGHGCWSSVPIKAGLQRNGKSCRLRWINYLRPGLKRGVFSKQEEDTIMTLHHMLGNKWSQIAQHLPGRTDNEIKNYWHSYLKKKVVKAKEIESDKQVHYASSSSDTMDNSFSPQKFATQDPNYGLFENMDKSTPPFDHSFSQNYNFSMETSQSSLPKLLFAEWLSVDHVNGGSSVNSDDSLVLGNEFDQNSTFQDAIMHMSEGHFGEGYHHNSLIQSSATEVYNSQLKLSNQVDGNDFDHCVAGVDFCSNFSLTNDTMYV* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0719 292 CDD SANT 71 113 IPR001005 -
Apr6g0719 292 CDD SANT 18 62 IPR001005 -
Apr6g0719 292 Gene3D - 70 140 - -
Apr6g0719 292 PANTHER MYB TRANSCRIPTION FACTOR 1 286 - -
Apr6g0719 292 SMART sant 67 115 IPR001005 -
Apr6g0719 292 SMART sant 14 64 IPR001005 -
Apr6g0719 292 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Apr6g0719 292 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Apr6g0719 292 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Apr6g0719 292 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Apr6g0719 292 Gene3D - 15 67 - -
Apr6g0719 292 SUPERFAMILY Homeodomain-like 13 109 IPR009057 -
Apr6g0719 292 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Apr6g0719 292 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Apr6g0719 292 PANTHER MYB DOMAIN PROTEIN 55 1 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0719 Apr-Chr6 11180710 11183413 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0719 8 284 MYB Transcription Factor Family AT3G48920 42.238 2.54e-64 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr6g0719 Myb_DNA-binding 9.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0719 K09422 - gmx:100803537 480.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0719 6 11180710 11183413 Apr6g0719 6 11180710 11183413 ECH