Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0718 ATGGGAAAAGCACCATGTTGTGATAAACATGGAGTGAGGAGGGGAGCTTGGACTCCTGAAGAAGATGAAGCATTGGTTCAGTATATTAATAAGCATGGACATGGAAGTTGGCGTACACTTCCCAAGCAAGCAGGTCTCCTTCGATGTGGAAAAAGTTGCCGGCTTAGATGGATAAATTATCTTCGCCCTGACATAAAACGGGGCCCATTTACTACTGAGGAAGAAAATAAAATTATTCAGCTTCATGGCATGCTTGGCAACAGGTGGGCTGCTATAGCATCCCAAATTCCAGGAAGAACAGACAATGAGATTAAGAACTATTGGAACACACAACTGAAGAAGCGCCTTCCTAACAAGTTGGGACATTCCAAAGGGCCACAACAATACCCTTTCAGTCCTGATCACAGCATTGCCAAATCTGAATCCCCTTCAACACGCCACATGGTACAATGGGAAAGTGCTAGAGTTGAGGCAGAGGCAAGGTTGTCTATGGAATCAGCATTGATCAATTCATGGTCAACAACTGAAACATACCCTGATCATTTTCTTCAACTTTGGCATTCTGATGTTGGAAAATCATTCCGCATGATCAAAGGAAAAGGGGTAGTGTGTCAAAGCCCTTTGTCACAAGCATCATCATCATCAAAATTGGAGTCATGTTCAGATGTCTCATTGCAAGCTAAGAACACTGCAAATAGTGCTATTGCAAACAAGTCACATGAACAAGGTAGTGGCTATAAAGCAAAGCTAGAAGATGGCACAGCTGGATCAGAATCTGGCTATTATGAATTTCTTGATACTTCTGACTCTGCATTGAATCAACTGCTTGATGTGCCTGACAGTGGAATAGGATTCCTAGGACAGAATGAGAGTTTCCTGAATACCCTTTATGGTAGATGTGACTAA 906 0.4249 MGKAPCCDKHGVRRGAWTPEEDEALVQYINKHGHGSWRTLPKQAGLLRCGKSCRLRWINYLRPDIKRGPFTTEEENKIIQLHGMLGNRWAAIASQIPGRTDNEIKNYWNTQLKKRLPNKLGHSKGPQQYPFSPDHSIAKSESPSTRHMVQWESARVEAEARLSMESALINSWSTTETYPDHFLQLWHSDVGKSFRMIKGKGVVCQSPLSQASSSSKLESCSDVSLQAKNTANSAIANKSHEQGSGYKAKLEDGTAGSESGYYEFLDTSDSALNQLLDVPDSGIGFLGQNESFLNTLYGRCD* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0718 301 MobiDBLite consensus disorder prediction 129 148 - -
Apr6g0718 301 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Apr6g0718 301 PANTHER MYB TRANSCRIPTION FACTOR MIXTA-LIKE PROTEIN 1 289 - -
Apr6g0718 301 CDD SANT 69 110 IPR001005 -
Apr6g0718 301 CDD SANT 16 61 IPR001005 -
Apr6g0718 301 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Apr6g0718 301 MobiDBLite consensus disorder prediction 121 148 - -
Apr6g0718 301 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Apr6g0718 301 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Apr6g0718 301 Gene3D - 14 66 - -
Apr6g0718 301 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Apr6g0718 301 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 289 - -
Apr6g0718 301 Gene3D - 69 136 - -
Apr6g0718 301 SMART sant 66 114 IPR001005 -
Apr6g0718 301 SMART sant 13 63 IPR001005 -
Apr6g0718 301 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Apr6g0718 301 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0718 Apr-Chr6 11169534 11172360 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0718 1 289 MYB Transcription Factor Family AT3G61250 52.508 5.74e-98 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr6g0718 Myb_DNA-binding 1.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0718 K09422 - gmx:100782075 445.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0718 6 11169534 11172360 Apr6g0718 6 11169534 11172360 ECH